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Literature DB >> 12618455

Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis.

Virginie Molle¹, Yoshiko Nakaura, Robert P Shivers, Hirotake Yamaguchi, Richard Losick, Yasutaro Fujita, Abraham L Sonenshein.

Abstract

Additional targets of CodY, a GTP-activated repressor of early stationary-phase genes in Bacillus subtilis, were identified by combining chromatin immunoprecipitation, DNA microarray hybridization, and gel mobility shift assays. The direct targets of CodY newly identified by this approach included regulatory genes for sporulation, genes that are likely to encode transporters for amino acids and sugars, and the genes for biosynthesis of branched-chain amino acids.

Entities: Chemical Species

Mesh：

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Year: 2003 PMID： 12618455 PMCID： PMC150151 DOI： 10.1128/JB.185.6.1911-1922.2003

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

63 in total

1. Genome-wide location and function of DNA binding proteins.

Authors: B Ren; F Robert; J J Wyrick; O Aparicio; E G Jennings; I Simon; J Zeitlinger; J Schreiber; N Hannett; E Kanin; T L Volkert; C J Wilson; S P Bell; R A Young
Journal: Science Date: 2000-12-22 Impact factor: 47.728

2. cis-acting regulatory sequences for antitermination in the transcript of the Bacillus subtilis hut operon and histidine-dependent binding of HutP to the transcript containing the regulatory sequences.

Authors: M Oda; N Kobayashi; A Ito; Y Kurusu; K Taira
Journal: Mol Microbiol Date: 2000-03 Impact factor: 3.501

3. Control of development by altered localization of a transcription factor in B. subtilis.

Authors: J D Quisel; D C Lin; A D Grossman
Journal: Mol Cell Date: 1999-11 Impact factor: 17.970

4. Characterization of LrpC DNA-binding properties and regulation of Bacillus subtilis lrpC gene expression.

Authors: C Beloin; R Exley; A L Mahé; M Zouine; S Cubasch; F Le Hégarat
Journal: J Bacteriol Date: 2000-08 Impact factor: 3.490

5. CcpC, a novel regulator of the LysR family required for glucose repression of the citB gene in Bacillus subtilis.

Authors: C Jourlin-Castelli; N Mani; M M Nakano; A L Sonenshein
Journal: J Mol Biol Date: 2000-01-28 Impact factor: 5.469

6. Systematic study of gene expression and transcription organization in the gntZ-ywaA region of the Bacillus subtilis genome.

Authors: K Yoshida; I Ishio; E Nagakawa; Y Yamamoto; M Yamamoto; Y Fujita
Journal: Microbiology Date: 2000-03 Impact factor: 2.777

7. Environmental regulation of Bacillus subtilis sigma(D)-dependent gene expression.

Authors: D B Mirel; W F Estacio; M Mathieu; E Olmsted; J Ramirez; L M Márquez-Magaña
Journal: J Bacteriol Date: 2000-06 Impact factor: 3.490

8. Activation of spo0A transcription by sigma H is necessary for sporulation but not for competence in Bacillus subtilis.

Authors: K J Siranosian; A D Grossman
Journal: J Bacteriol Date: 1994-06 Impact factor: 3.490

9. The dppA gene of Bacillus subtilis encodes a new D-aminopeptidase.

Authors: A Cheggour; L Fanuel; C Duez; B Joris; F Bouillenne; B Devreese; G Van Driessche; J Van Beeumen; J M Frère; C Goffin
Journal: Mol Microbiol Date: 2000-11 Impact factor: 3.501

10. The transcriptional profile of early to middle sporulation in Bacillus subtilis.

Authors: P Fawcett; P Eichenberger; R Losick; P Youngman
Journal: Proc Natl Acad Sci U S A Date: 2000-07-05 Impact factor: 11.205

131 in total

1. Complex regulation of the Bacillus subtilis aconitase gene.

Authors: Hyun-Jin Kim; Sam-In Kim; Manoja Ratnayake-Lecamwasam; Kiyoshi Tachikawa; Abraham L Sonenshein; Mark Strauch
Journal: J Bacteriol Date: 2003-03 Impact factor: 3.490

2. Identification and functional characterization of the Lactococcus lactis CodY-regulated branched-chain amino acid permease BcaP (CtrA).

Authors: Chris D den Hengst; Maarten Groeneveld; Oscar P Kuipers; Jan Kok
Journal: J Bacteriol Date: 2006-05 Impact factor: 3.490

Review 3. Functional genomics of gram-positive microorganisms.

Authors: Marta Perego; James A Hoch; John F Barrett
Journal: J Bacteriol Date: 2004-02 Impact factor: 3.490

4. Regulation of the Bacillus subtilis extracytoplasmic function protein sigma(Y) and its target promoters.

Authors: Min Cao; Letal Salzberg; Ching Sung Tsai; Thorsten Mascher; Carla Bonilla; Tao Wang; Rick W Ye; Leticia Márquez-Magaña; John D Helmann
Journal: J Bacteriol Date: 2003-08 Impact factor: 3.490

Review 5. Compartmentalization of gene expression during Bacillus subtilis spore formation.

Authors: David W Hilbert; Patrick J Piggot
Journal: Microbiol Mol Biol Rev Date: 2004-06 Impact factor: 11.056

6. Negative transcriptional regulation of the ilv-leu operon for biosynthesis of branched-chain amino acids through the Bacillus subtilis global regulator TnrA.

Authors: Shigeo Tojo; Takenori Satomura; Kaori Morisaki; Ken-Ichi Yoshida; Kazutake Hirooka; Yasutaro Fujita
Journal: J Bacteriol Date: 2004-12 Impact factor: 3.490