Literature DB >> 12614144

Backbone dynamics of green fluorescent protein and the effect of histidine 148 substitution.

Markus H J Seifert1, Julia Georgescu, Dorota Ksiazek, Pawel Smialowski, Till Rehm, Boris Steipe, Tad A Holak.   

Abstract

Green fluorescent protein (GFP) and its mutants have become valuable tools in molecular biology. GFP has been regarded as a very stable and rigid protein with the beta-barrel shielding the chromophore from the solvent. Here, we report the 15N nuclear magnetic resonance (NMR) studies on the green fluorescent protein (GFPuv) and its mutant His148Gly. 15N NMR relaxation studies of GFPuv show that most of the beta-barrel of GFP is rigid on the picosecond to nanosecond time scale. For several regions, including the first alpha-helix and beta-sheets 3, 7, 8, and 10, increased hydrogen-deuterium exchange rates suggest a substantial conformational flexibility on the microsecond to millisecond time scales. Mutation of residue 148 located in beta-sheet 7 is known to have a strong impact on the fluorescence properties of GFPs. UV absorption and fluorescence spectra in combination with 1H-15N NMR spectra indicate that the His148Gly mutation not only reduces the absorption of the anionic chromophore state but also affects the conformational stability, leading to the appearance of doubled backbone amide resonances for a number of residues. This suggests the presence of two conformations in slow exchange on the NMR time scale in this mutant.

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Year:  2003        PMID: 12614144     DOI: 10.1021/bi026481b

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  21 in total

1.  Unfolding of Green Fluorescent Protein mut2 in wet nanoporous silica gels.

Authors:  Barbara Campanini; Sara Bologna; Fabio Cannone; Giuseppe Chirico; Andrea Mozzarelli; Stefano Bettati
Journal:  Protein Sci       Date:  2005-03-31       Impact factor: 6.725

2.  Protein dynamics control proton transfer from bulk solvent to protein interior: a case study with a green fluorescent protein.

Authors:  Anoop M Saxena; Jayant B Udgaonkar; Guruswamy Krishnamoorthy
Journal:  Protein Sci       Date:  2005-06-03       Impact factor: 6.725

3.  The rough energy landscape of superfolder GFP is linked to the chromophore.

Authors:  Benjamin T Andrews; Andrea R Schoenfish; Melinda Roy; Geoffrey Waldo; Patricia A Jennings
Journal:  J Mol Biol       Date:  2007-08-15       Impact factor: 5.469

4.  The extremely slow-exchanging core and acid-denatured state of green fluorescent protein.

Authors:  Jie-Rong Huang; Shang-Te Danny Hsu; John Christodoulou; Sophie E Jackson
Journal:  HFSP J       Date:  2008-09-15

5.  Light-dependent regulation of structural flexibility in a photochromic fluorescent protein.

Authors:  Hideaki Mizuno; Tapas Kumar Mal; Markus Wälchli; Akihiro Kikuchi; Takashi Fukano; Ryoko Ando; Jeyaraman Jeyakanthan; Junichiro Taka; Yoshitsugu Shiro; Mitsuhiko Ikura; Atsushi Miyawaki
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-23       Impact factor: 11.205

6.  Exploring the folding pathway of green fluorescent protein through disulfide engineering.

Authors:  Derek J Pitman; Shounak Banerjee; Stephen J Macari; Christopher A Castaldi; Donna E Crone; Christopher Bystroff
Journal:  Protein Sci       Date:  2015-01-13       Impact factor: 6.725

7.  Toward Computationally Designed Self-Reporting Biosensors Using Leave-One-Out Green Fluorescent Protein.

Authors:  Yao-Ming Huang; Shounak Banerjee; Donna E Crone; Christian D Schenkelberg; Derek J Pitman; Patrick M Buck; Christopher Bystroff
Journal:  Biochemistry       Date:  2015-09-30       Impact factor: 3.162

8.  Optically modulatable blue fluorescent proteins.

Authors:  Amy E Jablonski; Russell B Vegh; Jung-Cheng Hsiang; Bettina Bommarius; Yen-Cheng Chen; Kyril M Solntsev; Andreas S Bommarius; Laren M Tolbert; Robert M Dickson
Journal:  J Am Chem Soc       Date:  2013-10-25       Impact factor: 15.419

9.  Complementation and reconstitution of fluorescence from circularly permuted and truncated green fluorescent protein.

Authors:  Yao-ming Huang; Christopher Bystroff
Journal:  Biochemistry       Date:  2009-02-10       Impact factor: 3.162

10.  Folding study of Venus reveals a strong ion dependence of its yellow fluorescence under mildly acidic conditions.

Authors:  Shang-Te Danny Hsu; Georg Blaser; Caroline Behrens; Lisa D Cabrita; Christopher M Dobson; Sophie E Jackson
Journal:  J Biol Chem       Date:  2009-11-09       Impact factor: 5.157

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