Literature DB >> 12604135

Coding DNA sequences: statistical distributions.

A Som1, S Sahoo, J Chakrabarti.   

Abstract

The base distributions in coding DNA sequences (CDS) are investigated. We explore the scaling properties of the 4-dimensional directed random walk and compare them with that for the DNA sequences. Inference from these observation are, however, contradicted by alternate analysis using factorial moments. To resolve this conflict we look directly at the nucleotide base distributions. In all the cases the base distributions change from gaussian to non-gaussian as the scale size is increased. The CDS, therefore, have nucleotide distributions different from the random.

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Year:  2003        PMID: 12604135     DOI: 10.1016/s0025-5564(02)00220-1

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  2 in total

1.  Word organization in coding DNA: a mathematical model.

Authors:  Indranil Mukhopadhyay; Anup Som; Satyabrata Sahoo
Journal:  Theory Biosci       Date:  2006-04-27       Impact factor: 1.919

2.  Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants.

Authors:  Xiaohan Yang; Brian E Scheffler; Leslie A Weston
Journal:  Plant Methods       Date:  2006-03-01       Impact factor: 4.993

  2 in total

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