Literature DB >> 12603159

Characterization of electronic structure and properties of a Bis(histidine) heme model complex.

Dayle M A Smith1, Michel Dupuis, Erich R Vorpagel, T P Straatsma.   

Abstract

Ferric and ferrous hemes, such as those present in electron transfer proteins, often have low-lying spin states that are very close in energy. To explore the relationship between spin state, geometry, and cytochrome electron transfer, we investigate, using density functional theory, the relative energies, electronic structure, and optimized geometries for a high- and low-spin ferric and ferrous heme model complex. Our model consists of an iron-porphyrin axially ligated by two imidazoles, which model the interaction of a heme with histidine residues. Using the B3LYP hybrid functional, we found that, in the ferric model heme complex, the doublet is lower in energy than the sextet by 8.4 kcal/mol and the singlet ferrous heme is 6.7 kcal/mol more stable than the quintet. The difference between the high-spin ferric and ferrous model heme energies yields an adiabatic electron affinity (AEA) of 5.24 eV, and the low-spin AEA is 5.17 eV. Both values are large enough to ensure electron trapping, and electronic structure analysis indicates that the iron d(pi) orbital is involved in the electron transfer between hemes. Mössbauer parameters calculated to verify the B3LYP electronic structure correlate very well with experimental values. Isotropic hyperfine coupling constants for the ligand nitrogen atoms were also evaluated. The optimized geometries of the ferric and ferrous hemes are consistent with structures from X-ray crystallography and reveal that the iron-imidazole distances are significantly longer in the high-spin hemes, which suggests that the protein environment, modeled here by the imidazoles, plays an important role in regulating the spin state. Iron-imidazole dissociation energies, force constants, and harmonic frequencies were calculated for the ferric and ferrous low-spin and high-spin hemes. In both the ferric and the ferrous cases, a single imidazole ligand is more easily dissociated from the high-spin hemes.

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Year:  2003        PMID: 12603159     DOI: 10.1021/ja0280473

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  5 in total

1.  Computational studies on imidazole heme conformations.

Authors:  Artur S Galstyan; Snezana D Zarić; Ernst-Walter Knapp
Journal:  J Biol Inorg Chem       Date:  2005-04-21       Impact factor: 3.358

2.  Reductive activation of the heme iron-nitrosyl intermediate in the reaction mechanism of cytochrome c nitrite reductase: a theoretical study.

Authors:  Dmytro Bykov; Frank Neese
Journal:  J Biol Inorg Chem       Date:  2012-03-28       Impact factor: 3.358

3.  Spin Interconversion of Heme-Peroxo-Copper Complexes Facilitated by Intramolecular Hydrogen-Bonding Interactions.

Authors:  Andrew W Schaefer; Melanie A Ehudin; David A Quist; Joel A Tang; Kenneth D Karlin; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2019-03-14       Impact factor: 15.419

4.  Insights into the Observed trans-Bond Length Variations upon NO Binding to Ferric and Ferrous Porphyrins with Neutral Axial Ligands.

Authors:  Rahul L Khade; Erwin G Abucayon; Douglas R Powell; George B Richter-Addo; Yong Zhang
Journal:  ACS Omega       Date:  2021-09-15

5.  The Mechanism of Biochemical NO-Sensing: Insights from Computational Chemistry.

Authors:  Ahmed M Rozza; Marcell Papp; Neil R McFarlane; Jeremy N Harvey; Julianna Oláh
Journal:  Chemistry       Date:  2022-07-11       Impact factor: 5.020

  5 in total

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