Literature DB >> 12598124

Did the loss of sigma factors initiate pseudogene accumulation in M. leprae?

M Madan Babu1.   

Abstract

Pseudogenes are non-functional regions in the genome that have arisen as a consequence of accumulating mutations that either result in the premature termination of proteins during protein synthesis or the disruption of transcription. There have been various discussions of the origins of pseudogenes and the models for their formation, but there has been little input on how pseudogenes could have accumulated in an organism. In this brief communication, I propose a two-step model for the accretion of pseudogenes in the Mycobacterium leprae genome, triggered by the loss of different sets of sigma factors at different time points during the course of evolution.

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Year:  2003        PMID: 12598124     DOI: 10.1016/s0966-842x(02)00031-8

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  14 in total

Review 1.  Sigma factors and global gene regulation in Mycobacterium tuberculosis.

Authors:  Riccardo Manganelli; Roberta Provvedi; Sebastien Rodrigue; Jocelyn Beaucher; Luc Gaudreau; Issar Smith; Roberta Proveddi
Journal:  J Bacteriol       Date:  2004-02       Impact factor: 3.490

2.  Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae.

Authors:  Michael P McLeod; Xiang Qin; Sandor E Karpathy; Jason Gioia; Sarah K Highlander; George E Fox; Thomas Z McNeill; Huaiyang Jiang; Donna Muzny; Leni S Jacob; Alicia C Hawes; Erica Sodergren; Rachel Gill; Jennifer Hume; Maggie Morgan; Guangwei Fan; Anita G Amin; Richard A Gibbs; Chao Hong; Xue-Jie Yu; David H Walker; George M Weinstock
Journal:  J Bacteriol       Date:  2004-09       Impact factor: 3.490

3.  ARC: automated resource classifier for agglomerative functional classification of prokaryotic proteins using annotation texts.

Authors:  Muthiah Gnanamani; Naveen Kumar; Srinivasan Ramachandran
Journal:  J Biosci       Date:  2007-08       Impact factor: 1.826

Review 4.  Implications of streamlining theory for microbial ecology.

Authors:  Stephen J Giovannoni; J Cameron Thrash; Ben Temperton
Journal:  ISME J       Date:  2014-04-17       Impact factor: 10.302

5.  Interplay of heritage and habitat in the distribution of bacterial signal transduction systems.

Authors:  Michael Y Galperin; Roger Higdon; Eugene Kolker
Journal:  Mol Biosyst       Date:  2010-02-09

Review 6.  Mycobacterium leprae: genes, pseudogenes and genetic diversity.

Authors:  Pushpendra Singh; Stewart T Cole
Journal:  Future Microbiol       Date:  2011-01       Impact factor: 3.165

7.  Whole-genome tiling array analysis of Mycobacterium leprae RNA reveals high expression of pseudogenes and noncoding regions.

Authors:  Takeshi Akama; Koichi Suzuki; Kazunari Tanigawa; Akira Kawashima; Huhehasi Wu; Noboru Nakata; Yasunori Osana; Yasubumi Sakakibara; Norihisa Ishii
Journal:  J Bacteriol       Date:  2009-03-13       Impact factor: 3.490

8.  Comparative genomic and phylogeographic analysis of Mycobacterium leprae.

Authors:  Marc Monot; Nadine Honoré; Thierry Garnier; Nora Zidane; Diana Sherafi; Alberto Paniz-Mondolfi; Masanori Matsuoka; G Michael Taylor; Helen D Donoghue; Abi Bouwman; Simon Mays; Claire Watson; Diana Lockwood; Ali Khamesipour; Ali Khamispour; Yahya Dowlati; Shen Jianping; Thomas H Rea; Lucio Vera-Cabrera; Mariane M Stefani; Sayera Banu; Murdo Macdonald; Bishwa Raj Sapkota; John S Spencer; Jérôme Thomas; Keith Harshman; Pushpendra Singh; Philippe Busso; Alexandre Gattiker; Jacques Rougemont; Patrick J Brennan; Stewart T Cole
Journal:  Nat Genet       Date:  2009-11-01       Impact factor: 38.330

9.  Reconstructing the ancestor of Mycobacterium leprae: the dynamics of gene loss and genome reduction.

Authors:  Laura Gómez-Valero; Eduardo P C Rocha; Amparo Latorre; Francisco J Silva
Journal:  Genome Res       Date:  2007-07-10       Impact factor: 9.043

10.  The pseudogenes of Mycobacterium leprae reveal the functional relevance of gene order within operons.

Authors:  Enrique M Muro; Nancy Mah; Gabriel Moreno-Hagelsieb; Miguel A Andrade-Navarro
Journal:  Nucleic Acids Res       Date:  2010-11-04       Impact factor: 16.971

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