Literature DB >> 12594934

The redox protein construction kit: pre-last universal common ancestor evolution of energy-conserving enzymes.

Frauke Baymann1, Evelyne Lebrun, Myriam Brugna, Barbara Schoepp-Cothenet, Marie-Thérèse Giudici-Orticoni, Wolfgang Nitschke.   

Abstract

Genome analyses and the resolution of three-dimensional structures have provided evidence in recent years for hitherto unexpected family relationships between redox proteins of very diverse enzymes involved in bioenergetic electron transport. Many of these enzymes appear in fact to be constructed from only a limited set of building blocks. Phylogenetic analysis of selected units from this "redox enzyme construction kit" indicates an origin for several prominent bioenergetic enzymes that is very early, lying before the divergence of Bacteria and Archaea. Possible scenarios for the early evolution of selected complexes are proposed based on the obtained tree topologies.

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Year:  2003        PMID: 12594934      PMCID: PMC1693098          DOI: 10.1098/rstb.2002.1184

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  33 in total

Review 1.  The coordination and function of the redox centres of the membrane-bound nitrate reductases.

Authors:  F Blasco; B Guigliarelli; A Magalon; M Asso; G Giordano; R A Rothery
Journal:  Cell Mol Life Sci       Date:  2001-02       Impact factor: 9.261

Review 2.  Early evolution of cytochrome bc complexes.

Authors:  M Schütz; M Brugna; E Lebrun; F Baymann; R Huber; K O Stetter; G Hauska; R Toci; D Lemesle-Meunier; P Tron; C Schmidt; W Nitschke
Journal:  J Mol Biol       Date:  2000-07-21       Impact factor: 5.469

3.  Interpreting the universal phylogenetic tree.

Authors:  C R Woese
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

4.  Phylogenetic analysis of metabolic pathways.

Authors:  C V Forst; K Schulten
Journal:  J Mol Evol       Date:  2001-06       Impact factor: 2.395

5.  A comprehensive phylogenetic analysis of Rieske and Rieske-type iron-sulfur proteins.

Authors:  C L Schmidt; L Shaw
Journal:  J Bioenerg Biomembr       Date:  2001-02       Impact factor: 2.945

Review 6.  A novel scenario for the evolution of haem-copper oxygen reductases.

Authors:  M M Pereira; M Santana; M Teixeira
Journal:  Biochim Biophys Acta       Date:  2001-06-01

7.  Molecular evidence for the early evolution of photosynthesis.

Authors:  J Xiong; W M Fischer; K Inoue; M Nakahara; C E Bauer
Journal:  Science       Date:  2000-09-08       Impact factor: 47.728

8.  The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum.

Authors:  A Ruepp; W Graml; M L Santos-Martinez; K K Koretke; C Volker; H W Mewes; D Frishman; S Stocker; A N Lupas; W Baumeister
Journal:  Nature       Date:  2000-09-28       Impact factor: 49.962

9.  Crystal structure of the 100 kDa arsenite oxidase from Alcaligenes faecalis in two crystal forms at 1.64 A and 2.03 A.

Authors:  P J Ellis; T Conrads; R Hille; P Kuhn
Journal:  Structure       Date:  2001-02-07       Impact factor: 5.006

10.  Horizontal transfer of archaeal genes into the deinococcaceae: detection by molecular and computer-based approaches.

Authors:  L Olendzenski; L Liu; O Zhaxybayeva; R Murphey; D G Shin; J P Gogarten
Journal:  J Mol Evol       Date:  2000-12       Impact factor: 2.395

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  39 in total

1.  The Qrc membrane complex, related to the alternative complex III, is a menaquinone reductase involved in sulfate respiration.

Authors:  Sofia S Venceslau; Rita R Lino; Ines A C Pereira
Journal:  J Biol Chem       Date:  2010-05-24       Impact factor: 5.157

Review 2.  Oxygen levels and the regulation of cell adhesion in the nervous system: a control point for morphogenesis in development, disease and evolution?

Authors:  Kathryn L Crossin
Journal:  Cell Adh Migr       Date:  2012 Jan-Feb       Impact factor: 3.405

Review 3.  On the origin of biochemistry at an alkaline hydrothermal vent.

Authors:  William Martin; Michael J Russell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

Review 4.  Beating the acetyl coenzyme A-pathway to the origin of life.

Authors:  Wolfgang Nitschke; Michael J Russell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-06-10       Impact factor: 6.237

Review 5.  Shifting the metallocentric molybdoenzyme paradigm: the importance of pyranopterin coordination.

Authors:  Richard A Rothery; Joel H Weiner
Journal:  J Biol Inorg Chem       Date:  2014-09-30       Impact factor: 3.358

6.  Molybdenum- and tungsten-containing formate dehydrogenases and formylmethanofuran dehydrogenases: Structure, mechanism, and cofactor insertion.

Authors:  Dimitri Niks; Russ Hille
Journal:  Protein Sci       Date:  2018-10-31       Impact factor: 6.725

7.  Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome.

Authors:  Frauke Baymann; Evelyne Lebrun; Wolfgang Nitschke
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-10       Impact factor: 11.205

8.  Pyranopterin Coordination Controls Molybdenum Electrochemistry in Escherichia coli Nitrate Reductase.

Authors:  Sheng-Yi Wu; Richard A Rothery; Joel H Weiner
Journal:  J Biol Chem       Date:  2015-08-21       Impact factor: 5.157

Review 9.  Bioenergetic constraints on the evolution of complex life.

Authors:  Nick Lane
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-05-01       Impact factor: 10.005

10.  Evolutionary history of redox metal-binding domains across the tree of life.

Authors:  Arye Harel; Yana Bromberg; Paul G Falkowski; Debashish Bhattacharya
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-28       Impact factor: 11.205

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