Literature DB >> 12594045

SF4 and SFRS14, two related putative splicing factors on human chromosome 19p13.11.

Natalie D Sampson1, Jane E Hewitt.   

Abstract

The splicing of nascent mRNA precursors is an essential step for the expression of all intron-containing eukaryotic genes. Removal of intron sequences from nascent transcripts is mediated by the spliceosome, a large multicomponent complex. We describe here the identification of two genes encoding related, putative splicing factors on human chromosome 19p13.11, SF4 (splicing factor 4) and SFRS14 (splicing factor arginine/serine-rich 14). Both genes encode proteins containing a SURP motif; this domain is found in several splicing proteins including Drosophila alternative splicing regulator, suppressor-of-white-apricot (SWAP) and the yeast splicing factor, prp21p. In addition, SF4 and SFRS14 contain a G-patch domain at their C-termini, a motif present in a large number of eukaryotic RNA-binding proteins. SFRS14 also contains an N-terminal region that is rich in arginine/serine residues, suggesting SFRS14 is a novel member of the SR-related family of pre-mRNA processing factors. We have also identified the mouse orthologues of SF4 and SFRS14, based on conserved domain organization and high sequence similarity. Interestingly, SFRS14 undergoes alternative 3'-end processing events that are conserved between human and mouse, suggesting a functional significance.

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Year:  2003        PMID: 12594045     DOI: 10.1016/s0378-1119(02)01230-1

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  11 in total

1.  Disease-Causing Mutations in SF3B1 Alter Splicing by Disrupting Interaction with SUGP1.

Authors:  Jian Zhang; Abdullah M Ali; Yen K Lieu; Zhaoqi Liu; Jianchao Gao; Raul Rabadan; Azra Raza; Siddhartha Mukherjee; James L Manley
Journal:  Mol Cell       Date:  2019-08-29       Impact factor: 17.970

2.  Re-evaluation of the role of calcium homeostasis endoplasmic reticulum protein (CHERP) in cellular calcium signaling.

Authors:  Yaping Lin-Moshier; Peter J Sebastian; Leeann Higgins; Natalie D Sampson; Jane E Hewitt; Jonathan S Marchant
Journal:  J Biol Chem       Date:  2012-11-12       Impact factor: 5.157

3.  Impact of spliceosome mutations on RNA splicing in myelodysplasia: dysregulated genes/pathways and clinical associations.

Authors:  Andrea Pellagatti; Richard N Armstrong; Violetta Steeples; Eshita Sharma; Emmanouela Repapi; Shalini Singh; Andrea Sanchi; Aleksandar Radujkovic; Patrick Horn; Hamid Dolatshad; Swagata Roy; John Broxholme; Helen Lockstone; Stephen Taylor; Aristoteles Giagounidis; Paresh Vyas; Anna Schuh; Angela Hamblin; Elli Papaemmanuil; Sally Killick; Luca Malcovati; Marco L Hennrich; Anne-Claude Gavin; Anthony D Ho; Thomas Luft; Eva Hellström-Lindberg; Mario Cazzola; Christopher W J Smith; Stephen Smith; Jacqueline Boultwood
Journal:  Blood       Date:  2018-06-21       Impact factor: 22.113

4.  G-patch domain and KOW motifs-containing protein, GPKOW; a nuclear RNA-binding protein regulated by protein kinase A.

Authors:  Anne Kristin Aksaas; Anja Cv Larsen; Marie Rogne; Ken Rosendal; Anne-Katrine Kvissel; Bjørn Steen Skålhegg
Journal:  J Mol Signal       Date:  2011-08-31

5.  XE7: a novel splicing factor that interacts with ASF/SF2 and ZNF265.

Authors:  A Helena Mangs; Helen J L Speirs; Christine Goy; David J Adams; M Andrea Markus; Brian J Morris
Journal:  Nucleic Acids Res       Date:  2006-09-18       Impact factor: 16.971

6.  Multi-phenotype analyses of hemostatic traits with cardiovascular events reveal novel genetic associations.

Authors:  Gerard Temprano-Sagrera; Colleen M Sitlani; William P Bone; Miguel Martin-Bornez; Benjamin F Voight; Alanna C Morrison; Scott M Damrauer; Paul S de Vries; Nicholas L Smith; Maria Sabater-Lleal
Journal:  J Thromb Haemost       Date:  2022-03-29       Impact factor: 16.036

7.  SUGP1 is a novel regulator of cholesterol metabolism.

Authors:  Mee J Kim; Chi-Yi Yu; Elizabeth Theusch; Devesh Naidoo; Kristen Stevens; Yu-Lin Kuang; Erin Schuetz; Amarjit S Chaudhry; Marisa W Medina
Journal:  Hum Mol Genet       Date:  2016-05-20       Impact factor: 6.150

8.  Whole-exome sequencing of muscle-invasive bladder cancer identifies recurrent copy number variation in IPO11 and prognostic significance of importin-11 overexpression on poor survival.

Authors:  Junjie Zhao; Weidong Xu; Minghui He; Zhensheng Zhang; Shuxiong Zeng; Chong Ma; Yinghao Sun; Chuanliang Xu
Journal:  Oncotarget       Date:  2016-11-15

9.  Genetic predictors of hippocampal subfield volume in PTSD cases and trauma-exposed controls.

Authors:  Rajendra A Morey; Melanie E Garrett; Jennifer S Stevens; Emily K Clarke; Courtney C Haswell; Sanne J H van Rooij; Negar Fani; Adriana Lori; Va Mid-Atlantic Mirecc Workgroup; Nathan A Kimbrel; Michelle F Dennis; Christine E Marx; Jean C Beckham; Gregory McCarthy; Michael A Hauser; Allison E Ashley-Koch
Journal:  Eur J Psychotraumatol       Date:  2020-07-29

Review 10.  Regulating Divergent Transcriptomes through mRNA Splicing and Its Modulation Using Various Small Compounds.

Authors:  Ken-Ichi Fujita; Takaki Ishizuka; Mizuki Mitsukawa; Masashi Kurata; Seiji Masuda
Journal:  Int J Mol Sci       Date:  2020-03-16       Impact factor: 5.923

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