Literature DB >> 12591623

A new family of global protein shape descriptors.

Peter Røgen1, Henrik Bohr.   

Abstract

A family of global geometric measures is constructed for protein structure classification. These measures originate from integral formulas of Vassiliev knot invariants and give rise to a unique classification scheme. Our measures can better discriminate between many known protein structures than the simple measures of the secondary structure content of these protein structures.

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Year:  2003        PMID： 12591623     DOI： 10.1016/s0025-5564(02)00216-x

Source DB:  PubMed          Journal:  Math Biosci        ISSN： 0025-5564            Impact factor:   2.144


  6 in total

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Journal:  Proteomics       Date:  2013-01-03       Impact factor: 3.984

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Journal:  BMC Bioinformatics       Date:  2006-05-04       Impact factor: 3.169

3.  Structure alignment based on coding of local geometric measures.

Authors:  Peter L Chang; Andrew W Rinne; T Gregory Dewey
Journal:  BMC Bioinformatics       Date:  2006-07-14       Impact factor: 3.169

4.  Effective moment feature vectors for protein domain structures.

Authors:  Jian-Yu Shi; Siu-Ming Yiu; Yan-Ning Zhang; Francis Yuk-Lun Chin
Journal:  PLoS One       Date:  2013-12-31       Impact factor: 3.240

5.  The Local Topological Free Energy of the SARS-CoV-2 Spike Protein.

Authors:  Quenisha Baldwin; Bobby Sumpter; Eleni Panagiotou
Journal:  Polymers (Basel)       Date:  2022-07-26       Impact factor: 4.967

6.  Structural footprinting in protein structure comparison: the impact of structural fragments.

Authors:  Elena Zotenko; Rezarta Islamaj Dogan; W John Wilbur; Dianne P O'Leary; Teresa M Przytycka
Journal:  BMC Struct Biol       Date:  2007-08-09
  6 in total

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