Literature DB >> 12590262

Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots.

M S Phillips1, R Lawrence, R Sachidanandam, A P Morris, D J Balding, M A Donaldson, J F Studebaker, W M Ankener, S V Alfisi, F-S Kuo, A L Camisa, V Pazorov, K E Scott, B J Carey, J Faith, G Katari, H A Bhatti, J M Cyr, V Derohannessian, C Elosua, A M Forman, N M Grecco, C R Hock, J M Kuebler, J A Lathrop, M A Mockler, E P Nachtman, S L Restine, S A Varde, M J Hozza, C A Gelfand, J Broxholme, G R Abecasis, M T Boyce-Jacino, L R Cardon.   

Abstract

Recent studies of human populations suggest that the genome consists of chromosome segments that are ancestrally conserved ('haplotype blocks'; refs. 1-3) and have discrete boundaries defined by recombination hot spots. Using publicly available genetic markers, we have constructed a first-generation haplotype map of chromosome 19. As expected for this marker density, approximately one-third of the chromosome is encompassed within haplotype blocks. Evolutionary modeling of the data indicates that recombination hot spots are not required to explain most of the observed blocks, providing that marker ascertainment and the observed marker spacing are considered. In contrast, several long blocks are inconsistent with our evolutionary models, and different mechanisms could explain their origins.

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Year:  2003        PMID: 12590262     DOI: 10.1038/ng1100

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  92 in total

1.  BLOCK-BASED BAYESIAN EPISTASIS ASSOCIATION MAPPING WITH APPLICATION TO WTCCC TYPE 1 DIABETES DATA.

Authors:  By Yu Zhang; Jing Zhang; Jun S Liu
Journal:  Ann Appl Stat       Date:  2011-09-01       Impact factor: 2.083

2.  Quantitative evaluation by minisequencing and microarrays reveals accurate multiplexed SNP genotyping of whole genome amplified DNA.

Authors:  Lovisa Lovmar; Mona Fredriksson; Ulrika Liljedahl; Snaevar Sigurdsson; Ann-Christine Syvänen
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

Review 3.  On the applicability of a haplotype map to un-assayed populations.

Authors:  Itsik Pe'er; Jacques S Beckmann
Journal:  Hum Genet       Date:  2003-10-25       Impact factor: 4.132

Review 4.  Hot and cold spots of recombination in the human genome: the reason we should find them and how this can be achieved.

Authors:  Norman Arnheim; Peter Calabrese; Magnus Nordborg
Journal:  Am J Hum Genet       Date:  2003-05-22       Impact factor: 11.025

5.  Patterns of linkage disequilibrium in the MHC region on human chromosome 6p.

Authors:  Annette Stenzel; Timothy Lu; W Andreas Koch; Jochen Hampe; Simone M Guenther; Francisco M De La Vega; Michael Krawczak; Stefan Schreiber
Journal:  Hum Genet       Date:  2004-01-22       Impact factor: 4.132

6.  Population-genetic basis of haplotype blocks in the 5q31 region.

Authors:  Eric C Anderson; Montgomery Slatkin
Journal:  Am J Hum Genet       Date:  2003-12-17       Impact factor: 11.025

7.  Finding haplotype block boundaries by using the minimum-description-length principle.

Authors:  Eric C Anderson; John Novembre
Journal:  Am J Hum Genet       Date:  2003-07-11       Impact factor: 11.025

8.  An integrated haplotype map of the human major histocompatibility complex.

Authors:  Emily C Walsh; Kristie A Mather; Stephen F Schaffner; Lisa Farwell; Mark J Daly; Nick Patterson; Michael Cullen; Mary Carrington; Teodorica L Bugawan; Henry Erlich; Jay Campbell; Jeffrey Barrett; Katie Miller; Glenys Thomson; Eric S Lander; John D Rioux
Journal:  Am J Hum Genet       Date:  2003-08-14       Impact factor: 11.025

9.  A torrid zone on mouse chromosome 1 containing a cluster of recombinational hotspots.

Authors:  Peter M Kelmenson; Petko Petkov; Xiaosong Wang; David C Higgins; Beverly J Paigen; Kenneth Paigen
Journal:  Genetics       Date:  2004-10-16       Impact factor: 4.562

10.  Comparative study of the haplotype structure and linkage disequilibrium of chromosome 1p36.2 region in the Korean and Japanese populations.

Authors:  Tamao Akesaka; Seong-Gene Lee; Jun Ohashi; Makoto Bannai; Naoyuki Tsuchiya; Yongsook Yoon; Katsushi Tokunaga; Kyuyoung Song
Journal:  J Hum Genet       Date:  2004-10-06       Impact factor: 3.172

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