Literature DB >> 12584718

Conformers of gaseous proline.

Eszter Czinki1, Attila G Császár.   

Abstract

Accurate geometries, relative energies, rotational and quartic centrifugal distortion constants, dipole moments, harmonic vibrational frequencies, and infrared intensities were determined from ab initio electronic structure calculations for eighteen conformers of the neutral form of the amino acid L-proline. Only four conformers have notable population at low and moderate temperature. The second most stable conformer is only 2+/-2 kJ mol(-1) above the global minimum, while the third and fourth conformers are nearly degenerate and have an excess energy of 7+/-2 kJ mol(-1) relative to the global minimum. All four conformers have one hydrogen bond: N.HO in the lower energy pair of conformers, and NH.O in the higher energy pair of conformers. The conformer pairs differ only in their ring puckering. The relative energies of the conformers include corrections for valence electron correlation, extrapolated to the complete basis set limit, as well as core correlation and relativistic effects. Structural features of the pyrrolidine ring of proline are discussed by using the concept of pseudorotation. The accurate rotational and quartic centrifugal distortion constants as well as the vibrational frequencies and infrared intensities should aid identification and characterization of the conformers of L-proline by rotational and vibrational spectroscopy, respectively. Bonding features of L-proline, especially intramolecular hydrogen bonds, were investigated by the atoms-in-molecules (AIM) technique.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 12584718     DOI: 10.1002/chem.200390103

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  9 in total

1.  DFT studies on the intrinsic conformational properties of non-ionic pyrrolysine in gas phase.

Authors:  Gunajyoti Das; Shilpi Mandal
Journal:  J Mol Model       Date:  2013-01-08       Impact factor: 1.810

2.  Computational investigations of the stereoselectivities of proline-related catalysts for aldol reactions.

Authors:  Christophe Allemann; Joann M Um; K N Houk
Journal:  J Mol Catal A Chem       Date:  2010-06-01

3.  Conformational preferences of beta- and gamma-aminated proline analogues.

Authors:  Alejandra Flores-Ortega; Jordi Casanovas; Ruth Nussinov; Carlos Alemán
Journal:  J Phys Chem B       Date:  2008-10-09       Impact factor: 2.991

4.  An insight into the interaction of L-proline with the transition metal cations Fe(2+), Co(2+), Ni(2+): a gas phase theoretical study.

Authors:  Behzad Khalili
Journal:  J Mol Model       Date:  2015-12-16       Impact factor: 1.810

5.  Stabilization of zwitterionic versus canonical proline by water molecules.

Authors:  Gang Yang; Lijun Zhou; Yang Chen
Journal:  Springerplus       Date:  2016-01-06

6.  A Molecular-Wide and Electron Density-Based Approach in Exploring Chemical Reactivity and Explicit Dimethyl Sulfoxide (DMSO) Solvent Molecule Effects in the Proline Catalyzed Aldol Reaction.

Authors:  Ignacy Cukrowski; George Dhimba; Darren L Riley
Journal:  Molecules       Date:  2022-01-31       Impact factor: 4.411

7.  A proline-based neuraminidase inhibitor: DFT studies on the zwitterion conformation, stability and formation.

Authors:  Zhi-Wei Yang; Xiao-Min Wu; Li-Jun Zhou; Gang Yang
Journal:  Int J Mol Sci       Date:  2009-09-07       Impact factor: 6.208

8.  First-principles data set of 45,892 isolated and cation-coordinated conformers of 20 proteinogenic amino acids.

Authors:  Matti Ropo; Markus Schneider; Carsten Baldauf; Volker Blum
Journal:  Sci Data       Date:  2016-02-16       Impact factor: 6.444

9.  TorsiFlex: an automatic generator of torsional conformers. Application to the twenty proteinogenic amino acids.

Authors:  David Ferro-Costas; Irea Mosquera-Lois; Antonio Fernández-Ramos
Journal:  J Cheminform       Date:  2021-12-24       Impact factor: 8.489

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.