Literature DB >> 12584132

Melina: motif extraction from promoter regions of potentially co-regulated genes.

Natalia Poluliakh1, Toshihisa Takagi, Kenta Nakai.   

Abstract

UNLABELLED: 'Melina' assists users to compare the results of four public softwares for DNA motif extraction in order to both confirm the reliability of each finding and avoid missing important motifs. It is also useful to optimize the sensitivity of software with a series of different parameter settings. AVAILABILITY: Melina is available at http://www.hgc.ims.u-tokyo.ac.jp/Melina/.

Mesh：

Substances：

Year:  2003        PMID： 12584132     DOI： 10.1093/bioinformatics/btf872

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  4 in total

1.  EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences.

Authors:  Jianjun Hu; Yifeng D Yang; Daisuke Kihara
Journal:  BMC Bioinformatics       Date:  2006-07-13       Impact factor: 3.169

2.  In silico discovery of novel transcription factors regulated by mTOR-pathway activities.

Authors:  Agnieszka Jablonska; Natalia Polouliakh
Journal:  Front Cell Dev Biol       Date:  2014-06-03

3.  Dempster-Shafer Theory for the Prediction of Auxin-Response Elements (AuxREs) in Plant Genomes.

Authors:  Nesrine Sghaier; Rayda Ben Ayed; Riadh Ben Marzoug; Ahmed Rebai
Journal:  Biomed Res Int       Date:  2018-11-01       Impact factor: 3.411

4.  Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions.

Authors:  Toshiyuki Okumura; Hiroki Makiguchi; Yuko Makita; Riu Yamashita; Kenta Nakai
Journal:  Nucleic Acids Res       Date:  2007-05-30       Impact factor: 16.971
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.