Literature DB >> 12584129

cMap: the comparative genetic map viewer.

Z Fang1, M Polacco, S Chen, S Schroeder, D Hancock, H Sanchez, E Coe.   

Abstract

UNLABELLED: cMap, a www comparative genetic map graphical utility, has a search capability and provides comparison of two genetic maps within or between species with dynamic links to data resources and text lists of the shared loci, running in a relational database environment. Currently, maps from three species (maize 'Zea mays L.', rice 'Oryza sativa L.', and sorghum 'Sorghum bicolor L.'), representing over 13,800 distinct loci, are available for comparison at http://www.agron.missouri.edu/cMapDB/cMap.html. AVAILABILITY: cMap source code is available without cost on request for non-commercial use.

Entities:  

Mesh：

Year:  2003        PMID： 12584129     DOI： 10.1093/bioinformatics/btg012

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  16 in total

1.  Comparative map and trait viewer (CMTV): an integrated bioinformatic tool to construct consensus maps and compare QTL and functional genomics data across genomes and experiments.

Authors:  M C Sawkins; A D Farmer; D Hoisington; J Sullivan; A Tolopko; Z Jiang; J-M Ribaut
Journal:  Plant Mol Biol       Date:  2004-10       Impact factor: 4.076

2.  A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6.

Authors:  Christopher A Saski; Frank A Feltus; Margaret E Staton; Barbara P Blackmon; Stephen P Ficklin; David N Kuhn; Raymond J Schnell; Howard Shapiro; Juan Carlos Motamayor
Journal:  BMC Genomics       Date:  2011-08-16       Impact factor: 3.969

3.  Evaluation of genes from eIF4E and eIF4G multigenic families as potential candidates for partial resistance QTLs to Rice yellow mottle virus in rice.

Authors:  Arnaud Boisnard; Laurence Albar; Deless Thiéméle; Myriam Rondeau; Alain Ghesquière
Journal:  Theor Appl Genet       Date:  2007-09-27       Impact factor: 5.699

4.  Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution.

Authors:  Jérôme Salse; Stéphanie Bolot; Michaël Throude; Vincent Jouffe; Benoît Piegu; Umar Masood Quraishi; Thomas Calcagno; Richard Cooke; Michel Delseny; Catherine Feuillet
Journal:  Plant Cell       Date:  2008-01-04       Impact factor: 11.277

5.  An application of high-throughput SNP genotyping for barley genome mapping and characterization of recombinant chromosome substitution lines.

Authors:  Kazuhiro Sato; Kazuyoshi Takeda
Journal:  Theor Appl Genet       Date:  2009-06-02       Impact factor: 5.699

6.  Comparative visualization of genetic and physical maps with Strudel.

Authors:  Micha Bayer; Iain Milne; Gordon Stephen; Paul Shaw; Linda Cardle; Frank Wright; David Marshall
Journal:  Bioinformatics       Date:  2011-03-03       Impact factor: 6.937

7.  454 sequencing of pooled BAC clones on chromosome 3H of barley.

Authors:  Kazuhiro Sato; Yuka Motoi; Nami Yamaji; Hideya Yoshida
Journal:  BMC Genomics       Date:  2011-05-19       Impact factor: 3.969

8.  Pristionchus.org: a genome-centric database of the nematode satellite species Pristionchus pacificus.

Authors:  Christoph Dieterich; Waltraud Roeseler; Patrick Sobetzko; Ralf J Sommer
Journal:  Nucleic Acids Res       Date:  2006-10-24       Impact factor: 16.971

9.  A single molecule scaffold for the maize genome.

Authors:  Shiguo Zhou; Fusheng Wei; John Nguyen; Mike Bechner; Konstantinos Potamousis; Steve Goldstein; Louise Pape; Michael R Mehan; Chris Churas; Shiran Pasternak; Dan K Forrest; Roger Wise; Doreen Ware; Rod A Wing; Michael S Waterman; Miron Livny; David C Schwartz
Journal:  PLoS Genet       Date:  2009-11-20       Impact factor: 5.917

10.  CMap 1.01: a comparative mapping application for the Internet.

Authors:  Ken Youens-Clark; Ben Faga; Immanuel V Yap; Lincoln Stein; Doreen Ware
Journal:  Bioinformatics       Date:  2009-07-30       Impact factor: 6.937
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