Literature DB >> 12575995

Extended disordered proteins: targeting function with less scaffold.

Kannan Gunasekaran1, Chung-Jung Tsai, Sandeep Kumar, David Zanuy, Ruth Nussinov.   

Abstract

It has been estimated that a large fraction of cellular proteins are natively disordered. Current opinion largely holds that natively disordered proteins are more 'adaptive', leading to advantages in regulation and in binding diverse ligands. Here, we argue for another, simple, physically based reason. Disordered proteins often have large intermolecular interfaces, the size of which is dictated by protein function. For proteins to be stable as monomers with extensive interfaces, protein size would need to be 2-3 times larger. This would either increase cellular crowding or enlarge the size of the cell by 15-30%, owing to the increase in the sequence length. Smaller sizes of cells, proteins, DNA and RNA conserve energy. Thus, disordered proteins provide a simple yet elegant solution to having large intermolecular interfaces, but with smaller protein, genome and cell sizes.

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Year:  2003        PMID: 12575995     DOI: 10.1016/S0968-0004(03)00003-3

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  113 in total

1.  The N-terminal domain (IF2N) of bacterial translation initiation factor IF2 is connected to the conserved C-terminal domains by a flexible linker.

Authors:  Brian Søgaard Laursen; Anne Cecillie Kjaergaard; Kim Kusk Mortensen; David W Hoffman; Hans Uffe Sperling-Petersen
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

2.  SAXS study of the PIR domain from the Grb14 molecular adaptor: a natively unfolded protein with a transient structure primer?

Authors:  K Moncoq; I Broutin; C T Craescu; P Vachette; A Ducruix; D Durand
Journal:  Biophys J       Date:  2004-10-01       Impact factor: 4.033

3.  Local control of a disorder-order transition in 4E-BP1 underpins regulation of translation via eIF4E.

Authors:  Shirley Tait; Kaushik Dutta; David Cowburn; Jim Warwicker; Andrew J Doig; John E G McCarthy
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-28       Impact factor: 11.205

4.  Phosphorylation Increases Persistence Length and End-to-End Distance of a Segment of Tau Protein.

Authors:  Alexander F Chin; Dmitri Toptygin; W Austin Elam; Travis P Schrank; Vincent J Hilser
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

5.  pH dependence of amide chemical shifts in natively disordered polypeptides detects medium-range interactions with ionizable residues.

Authors:  Mario Pujato; Clay Bracken; Romina Mancusso; Marcela Cataldi; María Luisa Tasayco
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

6.  Stability of HAMLET--a kinetically trapped alpha-lactalbumin oleic acid complex.

Authors:  Jonas Fast; Ann-Kristin Mossberg; Catharina Svanborg; Sara Linse
Journal:  Protein Sci       Date:  2005-02       Impact factor: 6.725

7.  Interactions of TolB with the translocation domain of colicin E9 require an extended TolB box.

Authors:  Sarah L Hands; Lisa E Holland; Mireille Vankemmelbeke; Lauren Fraser; Colin J Macdonald; Geoffrey R Moore; Richard James; Christopher N Penfold
Journal:  J Bacteriol       Date:  2005-10       Impact factor: 3.490

8.  Conservation of intrinsic disorder in protein domains and families: II. functions of conserved disorder.

Authors:  Jessica Walton Chen; Pedro Romero; Vladimir N Uversky; A Keith Dunker
Journal:  J Proteome Res       Date:  2006-04       Impact factor: 4.466

9.  Conformational Dynamics in Extended RGD-Containing Peptides.

Authors:  William R Lindemann; Alexander J Mijalis; José L Alonso; Peter P Borbat; Jack H Freed; M Amin Arnaout; Bradley L Pentelute; Julia H Ortony
Journal:  Biomacromolecules       Date:  2020-06-16       Impact factor: 6.988

10.  Phosphorylated intrinsically disordered region of FACT masks its nucleosomal DNA binding elements.

Authors:  Yasuo Tsunaka; Junko Toga; Hiroto Yamaguchi; Shin-ichi Tate; Susumu Hirose; Kosuke Morikawa
Journal:  J Biol Chem       Date:  2009-07-15       Impact factor: 5.157

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