Literature DB >> 12571354

Variation in gene expression patterns in follicular lymphoma and the response to rituximab.

Sean P Bohen1, Olga G Troyanskaya, Orly Alter, Roger Warnke, David Botstein, Patrick O Brown, Ronald Levy.   

Abstract

Analysis of the patterns of gene expression in follicular lymphomas from 24 patients suggested that two groups of tumors might be distinguished. All patients, whose biopsies were obtained before any treatment, were treated with rituximab, a monoclonal antibody directed against the B cell antigen, CD20. Gene expression patterns in the tumors that subsequently failed to respond to rituximab appeared more similar to those of normal lymphoid tissues than to gene expression patterns of tumors from rituximab responders. These findings suggest the possibility that the response of follicular lymphoma to rituximab treatment may be predicted from the gene expression pattern of tumors.

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Year:  2003        PMID: 12571354      PMCID: PMC149935          DOI: 10.1073/pnas.0437875100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  Missing value estimation methods for DNA microarrays.

Authors:  O Troyanskaya; M Cantor; G Sherlock; P Brown; T Hastie; R Tibshirani; D Botstein; R B Altman
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2.  Singular value decomposition for genome-wide expression data processing and modeling.

Authors:  O Alter; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

3.  Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications.

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Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

4.  Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.

Authors:  A A Alizadeh; M B Eisen; R E Davis; C Ma; I S Lossos; A Rosenwald; J C Boldrick; H Sabet; T Tran; X Yu; J I Powell; L Yang; G E Marti; T Moore; J Hudson; L Lu; D B Lewis; R Tibshirani; G Sherlock; W C Chan; T C Greiner; D D Weisenburger; J O Armitage; R Warnke; R Levy; W Wilson; M R Grever; J C Byrd; D Botstein; P O Brown; L M Staudt
Journal:  Nature       Date:  2000-02-03       Impact factor: 49.962

5.  Biologic response of B lymphoma cells to anti-CD20 monoclonal antibody rituximab in vitro: CD55 and CD59 regulate complement-mediated cell lysis.

Authors:  J Golay; L Zaffaroni; T Vaccari; M Lazzari; G M Borleri; S Bernasconi; F Tedesco; A Rambaldi; M Introna
Journal:  Blood       Date:  2000-06-15       Impact factor: 22.113

6.  Molecular portraits of human breast tumours.

Authors:  C M Perou; T Sørlie; M B Eisen; M van de Rijn; S S Jeffrey; C A Rees; J R Pollack; D T Ross; H Johnsen; L A Akslen; O Fluge; A Pergamenschikov; C Williams; S X Zhu; P E Lønning; A L Børresen-Dale; P O Brown; D Botstein
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

7.  Signaling events involved in anti-CD20-induced apoptosis of malignant human B cells.

Authors:  D Shan; J A Ledbetter; O W Press
Journal:  Cancer Immunol Immunother       Date:  2000-03       Impact factor: 6.968

8.  Clustered CD20 induced apoptosis: src-family kinase, the proximal regulator of tyrosine phosphorylation, calcium influx, and caspase 3-dependent apoptosis.

Authors:  J K Hofmeister; D Cooney; K M Coggeshall
Journal:  Blood Cells Mol Dis       Date:  2000-04       Impact factor: 3.039

9.  Diversity of gene expression in adenocarcinoma of the lung.

Authors:  M E Garber; O G Troyanskaya; K Schluens; S Petersen; Z Thaesler; M Pacyna-Gengelbach; M van de Rijn; G D Rosen; C M Perou; R I Whyte; R B Altman; P O Brown; D Botstein; I Petersen
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

10.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

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  32 in total

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Review 2.  Role of gene expression arrays in sarcomas.

Authors:  Keith M Skubitz; Amy P N Skubitz
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3.  Prognostic significance of host immune gene polymorphisms in follicular lymphoma survival.

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Journal:  Blood       Date:  2007-02-27       Impact factor: 22.113

4.  A perspective on DNA microarrays in pathology research and practice.

Authors:  Jonathan R Pollack
Journal:  Am J Pathol       Date:  2007-06-28       Impact factor: 4.307

Review 5.  Antibodies against G-protein coupled receptors: novel uses in screening and drug development.

Authors:  Achla Gupta; Andrea S Heimann; Ivone Gomes; Lakshmi A Devi
Journal:  Comb Chem High Throughput Screen       Date:  2008-07       Impact factor: 1.339

Review 6.  Host genetics in follicular lymphoma.

Authors:  James R Cerhan
Journal:  Best Pract Res Clin Haematol       Date:  2011-05-05       Impact factor: 3.020

7.  Shrinkage regression-based methods for microarray missing value imputation.

Authors:  Hsiuying Wang; Chia-Chun Chiu; Yi-Ching Wu; Wei-Sheng Wu
Journal:  BMC Syst Biol       Date:  2013-12-13

8.  CALGB 150905 (Alliance): rituximab broadens the antilymphoma response by activating unlicensed NK cells.

Authors:  Juan Du; Sandra Lopez-Verges; Brandelyn N Pitcher; Jeffrey Johnson; Sin-Ho Jung; Lili Zhou; Katharine Hsu; Myron S Czuczman; Bruce Cheson; Lawrence Kaplan; Lewis L Lanier; Jeffrey M Venstrom
Journal:  Cancer Immunol Res       Date:  2014-06-23       Impact factor: 11.151

9.  Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations.

Authors:  Brian B Tuch; Rebecca R Laborde; Xing Xu; Jian Gu; Christina B Chung; Cinna K Monighetti; Sarah J Stanley; Kerry D Olsen; Jan L Kasperbauer; Eric J Moore; Adam J Broomer; Ruoying Tan; Pius M Brzoska; Matthew W Muller; Asim S Siddiqui; Yan W Asmann; Yongming Sun; Scott Kuersten; Melissa A Barker; Francisco M De La Vega; David I Smith
Journal:  PLoS One       Date:  2010-02-19       Impact factor: 3.240

10.  Comparative analysis of missing value imputation methods to improve clustering and interpretation of microarray experiments.

Authors:  Magalie Celton; Alain Malpertuy; Gaëlle Lelandais; Alexandre G de Brevern
Journal:  BMC Genomics       Date:  2010-01-07       Impact factor: 3.969

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