Literature DB >> 12570650

Minimal model for genome evolution and growth.

Li-Ching Hsieh1, Liaofu Luo, Fengmin Ji, H C Lee.   

Abstract

Textual analysis of typical microbial genomes reveals that they have the statistical characteristics of a DNA sequence of a much shorter length. This peculiar property supports an evolutionary model in which a genome evolves by random mutation but primarily grows by random segmental duplication. That genomes grew mostly by duplication is consistent with the observation that repeat sequences in all genomes are widespread and intragenomic and intergenomic homologous genes are preponderant across all life forms.

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Year:  2003        PMID: 12570650     DOI: 10.1103/PhysRevLett.90.018101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  7 in total

1.  iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition.

Authors:  Hao Lin; En-Ze Deng; Hui Ding; Wei Chen; Kuo-Chen Chou
Journal:  Nucleic Acids Res       Date:  2014-10-31       Impact factor: 16.971

2.  Duplication count distributions in DNA sequences.

Authors:  Suzanne S Sindi; Brian R Hunt; James A Yorke
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-12-11

3.  Evolutionary dynamics of selfish DNA explains the abundance distribution of genomic subsequences.

Authors:  Michael Sheinman; Anna Ramisch; Florian Massip; Peter F Arndt
Journal:  Sci Rep       Date:  2016-08-04       Impact factor: 4.379

4.  SeeDNA: a visualization tool for K-string content of long DNA sequences and their randomized counterparts.

Authors:  Junjie Shen; Shuyu Zhang; Hoong-Chien Lee; Bailin Hao
Journal:  Genomics Proteomics Bioinformatics       Date:  2004-08       Impact factor: 7.691

5.  iRSpot-Pse6NC: Identifying recombination spots in Saccharomyces cerevisiae by incorporating hexamer composition into general PseKNC.

Authors:  Hui Yang; Wang-Ren Qiu; Guoqing Liu; Feng-Biao Guo; Wei Chen; Kuo-Chen Chou; Hao Lin
Journal:  Int J Biol Sci       Date:  2018-05-22       Impact factor: 6.580

6.  Inverse symmetry in complete genomes and whole-genome inverse duplication.

Authors:  Sing-Guan Kong; Wen-Lang Fan; Hong-Da Chen; Zi-Ting Hsu; Nengji Zhou; Bo Zheng; Hoong-Chien Lee
Journal:  PLoS One       Date:  2009-11-09       Impact factor: 3.240

7.  i-Genome: a database to summarize oligonucleotide data in genomes.

Authors:  Feng-Mao Lin; Hsien-Da Huang; Yu-Chung Chang; Jorng-Tzong Horng
Journal:  BMC Genomics       Date:  2004-10-09       Impact factor: 3.969

  7 in total

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