Literature DB >> 12560477

Genetic requirements for the targeted integration of Agrobacterium T-DNA in Saccharomyces cerevisiae.

Haico van Attikum1, Paul J J Hooykaas.   

Abstract

Agrobacterium tumefaciens delivers transferred DNA (T-DNA) into cells of plants and yeast. In plants, the T-DNA integrates at random positions into the genome by non-homologous recombination (NHR), whereas in yeast the T-DNA preferably integrates by homologous recombination (HR). Here we show that T-DNA integration by HR in yeast requires the recombination/repair proteins Rad51 and Rad52, but not Rad50, Mre11, Xrs2, Yku70 and Lig4. In the HR events a remarkable shift from insertion-type events to replacement events was observed in rad50, mre11 and xrs2 mutants. Residual integration in the rad51 mutant occurred predominantly by HR, whereas in the rad52 mutant integration occurred exclusively by NHR. Previously, we found that T-DNA integration by NHR is abolished in a yku70 mutant. Thus, Rad52 and Yku70 are the key regulators of T-DNA integration, channeling integration into either the HR or NHR pathway.

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Year:  2003        PMID: 12560477      PMCID: PMC149203          DOI: 10.1093/nar/gkg183

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  30 in total

1.  VirB/D4-dependent protein translocation from Agrobacterium into plant cells.

Authors:  A C Vergunst; B Schrammeijer; A den Dulk-Ras; C M de Vlaam; T J Regensburg-Tuïnk; P J Hooykaas
Journal:  Science       Date:  2000-11-03       Impact factor: 47.728

Review 2.  Nucleic acid transport in plant-microbe interactions: the molecules that walk through the walls.

Authors:  T Tzfira; Y Rhee; M H Chen; T Kunik; V Citovsky
Journal:  Annu Rev Microbiol       Date:  2000       Impact factor: 15.500

3.  Molecular cloning of the gene for the E1 alpha subunit of the pyruvate dehydrogenase complex from Saccharomyces cerevisiae.

Authors:  H Y Steensma; L Holterman; I Dekker; C A van Sluis; T J Wenzel
Journal:  Eur J Biochem       Date:  1990-08-17

Review 4.  Break-induced replication: a review and an example in budding yeast.

Authors:  E Kraus; W Y Leung; J E Haber
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

5.  A reexamination of the role of the RAD52 gene in spontaneous mitotic recombination.

Authors:  R E Malone; B A Montelone; C Edwards; K Carney; M F Hoekstra
Journal:  Curr Genet       Date:  1988-09       Impact factor: 3.886

6.  RAD10, an excision repair gene of Saccharomyces cerevisiae, is involved in the RAD1 pathway of mitotic recombination.

Authors:  R H Schiestl; S Prakash
Journal:  Mol Cell Biol       Date:  1990-06       Impact factor: 4.272

7.  Non-homologous end-joining proteins are required for Agrobacterium T-DNA integration.

Authors:  H van Attikum; P Bundock; P J Hooykaas
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

8.  Yeast transformation: a model system for the study of recombination.

Authors:  T L Orr-Weaver; J W Szostak; R J Rothstein
Journal:  Proc Natl Acad Sci U S A       Date:  1981-10       Impact factor: 11.205

9.  The Agrobacterium tumefaciens virE2 gene product is a single-stranded-DNA-binding protein that associates with T-DNA.

Authors:  P J Christie; J E Ward; S C Winans; E W Nester
Journal:  J Bacteriol       Date:  1988-06       Impact factor: 3.490

10.  A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae.

Authors:  R S Sikorski; P Hieter
Journal:  Genetics       Date:  1989-05       Impact factor: 4.562

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  25 in total

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Authors:  Stanton B Gelvin
Journal:  Plant Physiol       Date:  2009-05-13       Impact factor: 8.340

2.  Nonhomologous end joining-mediated gene replacement in plant cells.

Authors:  Dan Michael Weinthal; Roslyn Ann Taylor; Tzvi Tzfira
Journal:  Plant Physiol       Date:  2013-03-18       Impact factor: 8.340

3.  Inhibition of non-homologous end joining and integration of DNA upon transformation of Rhizopus oryzae.

Authors:  Christopher D Skory
Journal:  Mol Genet Genomics       Date:  2005-08-16       Impact factor: 3.291

Review 4.  Enhancing gene targeting efficiency in higher plants: rice is on the move.

Authors:  Olivier Cotsaftis; Emmanuel Guiderdoni
Journal:  Transgenic Res       Date:  2005-02       Impact factor: 2.788

Review 5.  Agrobacterium-mediated transformation as a tool for functional genomics in fungi.

Authors:  Caroline B Michielse; Paul J J Hooykaas; Cees A M J J van den Hondel; Arthur F J Ram
Journal:  Curr Genet       Date:  2005-05-12       Impact factor: 3.886

6.  Potassium chloride and rare earth elements improve plant growth and increase the frequency of the Agrobacterium tumefaciens-mediated plant transformation.

Authors:  Alex Boyko; Aki Matsuoka; Igor Kovalchuk
Journal:  Plant Cell Rep       Date:  2010-12-05       Impact factor: 4.570

7.  Molecular analysis of Agrobacterium T-DNA integration in tomato reveals a role for left border sequence homology in most integration events.

Authors:  Colwyn M Thomas; Jonathan D G Jones
Journal:  Mol Genet Genomics       Date:  2007-06-16       Impact factor: 3.291

8.  Site-specific integration of Agrobacterium tumefaciens T-DNA via double-stranded intermediates.

Authors:  Tzvi Tzfira; Leah Renée Frankman; Manjusha Vaidya; Vitaly Citovsky
Journal:  Plant Physiol       Date:  2003-10-09       Impact factor: 8.340

9.  Spectrum of T-DNA integrations for insertional mutagenesis of Histoplasma capsulatum.

Authors:  Megan M Kemski; Bryan Stevens; Chad A Rappleye
Journal:  Fungal Biol       Date:  2012-12-02

10.  High frequency Agrobacterium tumefaciens-mediated plant transformation induced by ammonium nitrate.

Authors:  Alex Boyko; Aki Matsuoka; Igor Kovalchuk
Journal:  Plant Cell Rep       Date:  2009-02-17       Impact factor: 4.570

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