Literature DB >> 12554942

Faster data-collection strategies for structure determination using anomalous dispersion.

Ana González1.   

Abstract

Many macromolecular structures are being determined using anomalous dispersion phasing methods. Different data-collection strategies at one, two, three or more wavelengths can be used for these experiments. The choice of strategy can determine the success or failure of the experiment and should be based on a clear understanding of the advantages and disadvantages of each approach given the experimental constraints and goals. In this paper, several sets of three-wavelength MAD experiment data were reanalyzed using one, two and three wavelengths and systematically removing reflections from the data sets to determine the minimum amount of data required to yield an automatically traceable map as a function of the number of wavelengths used in phasing. In the cases studied here, two-wavelength MAD consistently required fewer data than three-wavelength MAD, as long as the unique data completeness was high at each wavelength. It was also found in some instances that using one wavelength for phasing required as much or more data as using two wavelengths. These results can help with the design of adequate data-collection strategies which maximize the phasing power from the minimal data collected. This is particularly important for minimizing the effects of radiation damage on phasing while taking sample characteristics, beamline properties and experimental goals into account.

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Year:  2003        PMID: 12554942     DOI: 10.1107/s0907444902022138

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  4 in total

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Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-05-31

2.  Crystallization and preliminary X-ray diffraction of human interleukin-7 bound to unglycosylated and glycosylated forms of its alpha-receptor.

Authors:  Joseph Wickham; Scott T R Walsh
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-09-19

3.  The design of macromolecular crystallography diffraction experiments.

Authors:  Gwyndaf Evans; Danny Axford; Robin L Owen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

4.  The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function.

Authors:  Debanu Das; Robert D Finn; Dennis Carlton; Mitchell D Miller; Polat Abdubek; Tamara Astakhova; Herbert L Axelrod; Constantina Bakolitsa; Connie Chen; Hsiu Ju Chiu; Michelle Chiu; Thomas Clayton; Marc C Deller; Lian Duan; Kyle Ellrott; Dustin Ernst; Carol L Farr; Julie Feuerhelm; Joanna C Grant; Anna Grzechnik; Gye Won Han; Lukasz Jaroszewski; Kevin K Jin; Heath E Klock; Mark W Knuth; Piotr Kozbial; S Sri Krishna; Abhinav Kumar; David Marciano; Daniel McMullan; Andrew T Morse; Edward Nigoghossian; Amanda Nopakun; Linda Okach; Christina Puckett; Ron Reyes; Christopher L Rife; Natasha Sefcovic; Henry J Tien; Christine B Trame; Henry van den Bedem; Dana Weekes; Tiffany Wooten; Qingping Xu; Keith O Hodgson; John Wooley; Marc André Elsliger; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-05
  4 in total

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