Literature DB >> 12554855

After the ribosome structures: how does peptidyl transferase work?

Peter B Moore1, Thomas A Steitz.   

Abstract

Atomic resolution crystal structures of the large subunit published since the middle of August 2000 prove that the peptidyl transferase center of the ribosome, which is the site of peptide-bond formation, is composed entirely of RNA; the ribosome is a ribozyme. They also demonstrate that alignment of the CCA ends of ribosome-bound peptidyl tRNA and aminoacyl tRNA in the peptidyl transferase center contributes significantly to its catalytic power. Several issues remain unresolved. For example, do any components of the site enhance the rate of peptide-bond formation chemically? Do intact ribosomes make peptide bonds the same way as the isolated large subunits that have been the source of all this atomic resolution structural information?

Mesh:

Substances:

Year:  2003        PMID: 12554855      PMCID: PMC1370378          DOI: 10.1261/rna.2127103

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  15 in total

1.  A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits.

Authors:  T Martin Schmeing; Amy C Seila; Jeffrey L Hansen; Betty Freeborn; Juliane K Soukup; Stephen A Scaringe; Scott A Strobel; Peter B Moore; Thomas A Steitz
Journal:  Nat Struct Biol       Date:  2002-03

2.  Analysis of mutations at residues A2451 and G2447 of 23S rRNA in the peptidyltransferase active site of the 50S ribosomal subunit.

Authors:  J Thompson; D F Kim; M O'Connor; K R Lieberman; M A Bayfield; S T Gregory; R Green; H F Noller; A E Dahlberg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-24       Impact factor: 11.205

3.  Catalysis of peptide bond formation by 50 S ribosomal subunits from Escherichia coli.

Authors:  R E Monro
Journal:  J Mol Biol       Date:  1967-05-28       Impact factor: 5.469

4.  Ribosome-catalysed peptidyl transfer: the polyphenylalanine system.

Authors:  B E Maden; R R Traut; R E Monro
Journal:  J Mol Biol       Date:  1968-07-28       Impact factor: 5.469

5.  pH-dependent conformational flexibility within the ribosomal peptidyl transferase center.

Authors:  G W Muth; L Chen; A B Kosek; S A Strobel
Journal:  RNA       Date:  2001-10       Impact factor: 4.942

6.  pKa of adenine 2451 in the ribosomal peptidyl transferase center remains elusive.

Authors:  L Xiong; N Polacek; P Sander; E C Böttger; A Mankin
Journal:  RNA       Date:  2001-10       Impact factor: 4.942

7.  The kink-turn: a new RNA secondary structure motif.

Authors:  D J Klein; T M Schmeing; P B Moore; T A Steitz
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

8.  A conformational change in the ribosomal peptidyl transferase center upon active/inactive transition.

Authors:  M A Bayfield; A E Dahlberg; U Schulmeister; S Dorner; A Barta
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

9.  Structural insights into peptide bond formation.

Authors:  Jeffrey L Hansen; T Martin Schmeing; Peter B Moore; Thomas A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-16       Impact factor: 11.205

10.  Important contribution to catalysis of peptide bond formation by a single ionizing group within the ribosome.

Authors:  Vladimir I Katunin; Gregory W Muth; Scott A Strobel; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  Mol Cell       Date:  2002-08       Impact factor: 17.970

View more
  7 in total

1.  Mechanism of peptide bond synthesis on the ribosome.

Authors:  Stefan Trobro; Johan Aqvist
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-22       Impact factor: 11.205

2.  Rapid peptide bond formation on isolated 50S ribosomal subunits.

Authors:  Ingo Wohlgemuth; Malte Beringer; Marina V Rodnina
Journal:  EMBO Rep       Date:  2006-06-16       Impact factor: 8.807

3.  23S rRNA nucleotides in the peptidyl transferase center are essential for tryptophanase operon induction.

Authors:  Rui Yang; Luis R Cruz-Vera; Charles Yanofsky
Journal:  J Bacteriol       Date:  2009-03-27       Impact factor: 3.490

4.  Water in the active site of an all-RNA hairpin ribozyme and effects of Gua8 base variants on the geometry of phosphoryl transfer.

Authors:  Jason Salter; Jolanta Krucinska; Shabnam Alam; Valerie Grum-Tokars; Joseph E Wedekind
Journal:  Biochemistry       Date:  2006-01-24       Impact factor: 3.162

5.  Mapping platinum adducts on yeast ribosomal RNA using high-throughput sequencing.

Authors:  Kory Plakos; Victoria J DeRose
Journal:  Chem Commun (Camb)       Date:  2017-11-28       Impact factor: 6.222

Review 6.  Decoding the genome: a modified view.

Authors:  Paul F Agris
Journal:  Nucleic Acids Res       Date:  2004-01-09       Impact factor: 16.971

7.  Reciprocal Nucleopeptides as the Ancestral Darwinian Self-Replicator.

Authors:  Eleanor F Banwell; Bernard M A G Piette; Anne Taormina; Jonathan G Heddle
Journal:  Mol Biol Evol       Date:  2018-02-01       Impact factor: 16.240

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.