Literature DB >> 12554661

Molecular evidence for a positive role of Spt4 in transcription elongation.

Ana G Rondón1, María García-Rubio, Sergio González-Barrera, Andrés Aguilera.   

Abstract

We have previously shown that yeast mutants of the THO complex have a defect in gene expression, observed as an impairment of lacZ transcription. Here we analyze the ability of mutants of different transcription elongation factors to transcribe lacZ. We found that spt4Delta, like THO mutants, impaired transcription of lacZ and of long and GC-rich DNA sequences fused to the GAL1 promoter. Using a newly developed in vitro transcription elongation assay, we show that Spt4 is required in elongation. There is a functional interaction between Spt4 and THO, detected by the lethality or strong gene expression defect and hyper-recombination phenotypes of double mutants in the W303 genetic background. Our results indicate that Spt4-Spt5 has a positive role in transcription elongation and suggest that Spt4-Spt5 and THO act at different steps during mRNA biogenesis.

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Year:  2003        PMID: 12554661      PMCID: PMC140732          DOI: 10.1093/emboj/cdg047

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  53 in total

1.  Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast.

Authors:  J J Wyrick; F C Holstege; E G Jennings; H C Causton; D Shore; M Grunstein; E S Lander; R A Young
Journal:  Nature       Date:  1999-11-25       Impact factor: 49.962

2.  Positive transcription elongation factor B phosphorylates hSPT5 and RNA polymerase II carboxyl-terminal domain independently of cyclin-dependent kinase-activating kinase.

Authors:  J B Kim; P A Sharp
Journal:  J Biol Chem       Date:  2001-01-05       Impact factor: 5.157

3.  A novel histone acetyltransferase is an integral subunit of elongating RNA polymerase II holoenzyme.

Authors:  B O Wittschieben; G Otero; T de Bizemont; J Fellows; H Erdjument-Bromage; R Ohba; Y Li; C D Allis; P Tempst; J Q Svejstrup
Journal:  Mol Cell       Date:  1999-07       Impact factor: 17.970

4.  Spt5 and spt6 are associated with active transcription and have characteristics of general elongation factors in D. melanogaster.

Authors:  C D Kaplan; J R Morris; C Wu; F Winston
Journal:  Genes Dev       Date:  2000-10-15       Impact factor: 11.361

5.  High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation.

Authors:  E D Andrulis; E Guzmán; P Döring; J Werner; J T Lis
Journal:  Genes Dev       Date:  2000-10-15       Impact factor: 11.361

6.  FACT relieves DSIF/NELF-mediated inhibition of transcriptional elongation and reveals functional differences between P-TEFb and TFIIH.

Authors:  T Wada; G Orphanides; J Hasegawa; D K Kim; D Shima; Y Yamaguchi; A Fukuda; K Hisatake; S Oh; D Reinberg; H Handa
Journal:  Mol Cell       Date:  2000-06       Impact factor: 17.970

7.  Saccharomyces cerevisiae transcription elongation mutants are defective in PUR5 induction in response to nucleotide depletion.

Authors:  R J Shaw; D Reines
Journal:  Mol Cell Biol       Date:  2000-10       Impact factor: 4.272

8.  A protein complex containing Tho2, Hpr1, Mft1 and a novel protein, Thp2, connects transcription elongation with mitotic recombination in Saccharomyces cerevisiae.

Authors:  S Chávez; T Beilharz; A G Rondón; H Erdjument-Bromage; P Tempst; J Q Svejstrup; T Lithgow; A Aguilera
Journal:  EMBO J       Date:  2000-11-01       Impact factor: 11.598

9.  The 19S regulatory particle of the proteasome is required for efficient transcription elongation by RNA polymerase II.

Authors:  A Ferdous; F Gonzalez; L Sun; T Kodadek; S A Johnston
Journal:  Mol Cell       Date:  2001-05       Impact factor: 17.970

10.  Synthetic lethal interactions suggest a role for the Saccharomyces cerevisiae Rtf1 protein in transcription elongation.

Authors:  P J Costa; K M Arndt
Journal:  Genetics       Date:  2000-10       Impact factor: 4.562

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  54 in total

1.  In vivo evidence that defects in the transcriptional elongation factors RPB2, TFIIS, and SPT5 enhance upstream poly(A) site utilization.

Authors:  Yajun Cui; Clyde L Denis
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

2.  Transitions in RNA polymerase II elongation complexes at the 3' ends of genes.

Authors:  Minkyu Kim; Seong-Hoon Ahn; Nevan J Krogan; Jack F Greenblatt; Stephen Buratowski
Journal:  EMBO J       Date:  2004-01-22       Impact factor: 11.598

3.  Coupled RNA polymerase II transcription and 3' end formation with yeast whole-cell extracts.

Authors:  Luisa Mariconti; Bernhard Loll; Karola Schlinkmann; Agnieszka Wengi; Anton Meinhart; Bernhard Dichtl
Journal:  RNA       Date:  2010-09-01       Impact factor: 4.942

4.  The Transcription Factor THO Promotes Transcription Initiation and Elongation by RNA Polymerase I.

Authors:  Yinfeng Zhang; Sarah L French; Ann L Beyer; David A Schneider
Journal:  J Biol Chem       Date:  2015-12-09       Impact factor: 5.157

5.  Npl3 is an antagonist of mRNA 3' end formation by RNA polymerase II.

Authors:  Miriam E Bucheli; Stephen Buratowski
Journal:  EMBO J       Date:  2005-05-19       Impact factor: 11.598

6.  RNA polymerase II elongation factors Spt4p and Spt5p play roles in transcription elongation by RNA polymerase I and rRNA processing.

Authors:  D A Schneider; S L French; Y N Osheim; A O Bailey; L Vu; J Dodd; J R Yates; A L Beyer; M Nomura
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-14       Impact factor: 11.205

7.  Evidence that the transcription elongation function of Rpb9 is involved in transcription-coupled DNA repair in Saccharomyces cerevisiae.

Authors:  Shisheng Li; Baojin Ding; Runqiang Chen; Christine Ruggiero; Xuefeng Chen
Journal:  Mol Cell Biol       Date:  2006-10-09       Impact factor: 4.272

8.  Spt6 enhances the elongation rate of RNA polymerase II in vivo.

Authors:  M Behfar Ardehali; Jie Yao; Karen Adelman; Nicholas J Fuda; Steven J Petesch; Watt W Webb; John T Lis
Journal:  EMBO J       Date:  2009-03-12       Impact factor: 11.598

Review 9.  Biogenesis of mRNPs: integrating different processes in the eukaryotic nucleus.

Authors:  Rosa Luna; Hélène Gaillard; Cristina González-Aguilera; Andrés Aguilera
Journal:  Chromosoma       Date:  2008-04-22       Impact factor: 4.316

10.  The THP1-SAC3-SUS1-CDC31 complex works in transcription elongation-mRNA export preventing RNA-mediated genome instability.

Authors:  Cristina González-Aguilera; Cristina Tous; Belén Gómez-González; Pablo Huertas; Rosa Luna; Andrés Aguilera
Journal:  Mol Biol Cell       Date:  2008-07-30       Impact factor: 4.138

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