Literature DB >> 12552105

Coarse-grained stochastic processes for microscopic lattice systems.

Markos A Katsoulakis1, Andrew J Majda, Dionisios G Vlachos.   

Abstract

Diverse scientific disciplines ranging from materials science to catalysis to biomolecular dynamics to climate modeling involve nonlinear interactions across a large range of physically significant length scales. Here a class of coarse-grained stochastic processes and corresponding Monte Carlo simulation methods, describing computationally feasible mesoscopic length scales, are derived directly from microscopic lattice systems. It is demonstrated below that the coarse-grained stochastic models can capture large-scale structures while retaining significant microscopic information. The requirement of detailed balance is used as a systematic design principle to guarantee correct noise fluctuations for the coarse-grained model. The coarse-grained stochastic algorithms provide large computational savings without increasing programming complexity or computer time per executive event compared to microscopic Monte Carlo simulations.

Mesh:

Year:  2003        PMID: 12552105      PMCID: PMC298678          DOI: 10.1073/pnas.242741499

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  5 in total

1.  Models for stochastic climate prediction.

Authors:  A J Majda; I Timofeyev
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

2.  Derivation and validation of mesoscopic theories for diffusion of interacting molecules

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Journal:  Phys Rev Lett       Date:  2000-10-30       Impact factor: 9.161

3.  Stochastic and mesoscopic models for tropical convection.

Authors:  Andrew J Majda; Boualem Khouider
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-05       Impact factor: 11.205

4.  From microscopic interactions to macroscopic laws of cluster evolution

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Journal:  Phys Rev Lett       Date:  2000-02-14       Impact factor: 9.161

5.  Spatiotemporal concentration patterns in a surface reaction: Propagating and standing waves, rotating spirals, and turbulence.

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Journal:  Phys Rev Lett       Date:  1990-12-10       Impact factor: 9.161

  5 in total
  4 in total

1.  Coarse-grained stochastic models for tropical convection and climate.

Authors:  Boualem Khouider; Andrew J Majda; Markos A Katsoulakis
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-30       Impact factor: 11.205

2.  Stochastic models for convective momentum transport.

Authors:  Andrew J Majda; Samuel N Stechmann
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-17       Impact factor: 11.205

3.  Improving model fidelity and sensitivity for complex systems through empirical information theory.

Authors:  Andrew J Majda; Boris Gershgorin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-06       Impact factor: 11.205

4.  Adaptive coarse-grained Monte Carlo simulation of reaction and diffusion dynamics in heterogeneous plasma membranes.

Authors:  Stuart Collins; Michail Stamatakis; Dionisios G Vlachos
Journal:  BMC Bioinformatics       Date:  2010-04-29       Impact factor: 3.169

  4 in total

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