Literature DB >> 12542696

tmRNA from Thermus thermophilus. Interaction with alanyl-tRNA synthetase and elongation factor Tu.

Victor G Stepanov1, Jens Nyborg.   

Abstract

The interaction of a Thermus thermophilus tmRNA transcript with alanyl-tRNA synthetase and elongation factor Tu has been studied. The synthetic tmRNA was found to be stable up to 70 degrees C. The thermal optimum of tmRNA alanylation was determined to be around 50 degrees C. At 50 degrees C, tmRNA transcript was aminoacylated by alanyl-tRNA synthetase with 5.9 times lower efficiency (kcat/Km) than tRNAAla, primarily because of the difference in turnover numbers (kcat). Studies on EF-Tu protection of Ala approximately tmRNA against alkaline hydrolysis revealed the existence of at least two different binding sites for EF-Tu on charged tmRNA. The possible nature of these binding sites is discussed.

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Year:  2003        PMID: 12542696     DOI: 10.1046/j.1432-1033.2003.03401.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  8 in total

Review 1.  Structure and functional properties of prokaryotic small noncoding RNAs.

Authors:  K Mikulík
Journal:  Folia Microbiol (Praha)       Date:  2003       Impact factor: 2.099

2.  Role of the C-terminal tail of SmpB in the early stage of trans-translation.

Authors:  Daisuke Kurita; Akira Muto; Hyouta Himeno
Journal:  RNA       Date:  2010-03-26       Impact factor: 4.942

3.  A functional interaction of SmpB with tmRNA for determination of the resuming point of trans-translation.

Authors:  Takayuki Konno; Daisuke Kurita; Kazuma Takada; Akira Muto; Hyouta Himeno
Journal:  RNA       Date:  2007-08-13       Impact factor: 4.942

4.  In vitro trans-translation of Thermus thermophilus: ribosomal protein S1 is not required for the early stage of trans-translation.

Authors:  Kazuma Takada; Chie Takemoto; Masahito Kawazoe; Takayuki Konno; Kyoko Hanawa-Suetsugu; Sungga Lee; Mikako Shirouzu; Shigeyuki Yokoyama; Akira Muto; Hyouta Himeno
Journal:  RNA       Date:  2007-02-13       Impact factor: 4.942

5.  A minimum structure of aminoglycosides that causes an initiation shift of trans-translation.

Authors:  Takayuki Konno; Toshiharu Takahashi; Daisuke Kurita; Akira Muto; Hyouta Himeno
Journal:  Nucleic Acids Res       Date:  2004-08-04       Impact factor: 16.971

6.  tRNA/mRNA Mimicry by tmRNA and SmpB in Trans-Translation.

Authors:  Daisuke Kurita; Akira Muto; Hyouta Himeno
Journal:  J Nucleic Acids       Date:  2011-01-05

7.  Independent binding sites of small protein B onto transfer-messenger RNA during trans-translation.

Authors:  Laurent Metzinger; Marc Hallier; Brice Felden
Journal:  Nucleic Acids Res       Date:  2005-04-28       Impact factor: 16.971

Review 8.  Trans-translation exposed: understanding the structures and functions of tmRNA-SmpB.

Authors:  Emmanuel Giudice; Kevin Macé; Reynald Gillet
Journal:  Front Microbiol       Date:  2014-03-21       Impact factor: 5.640

  8 in total

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