Literature DB >> 12542410

Finding and decrypting of promoters contributes to the elucidation of gene function.

Thomas Werner1.   

Abstract

The combination of full-scale genomic sequencing with high throughput expression analysis provides a new and largely unexploited basis for in silico functional genomics. Recent break through developments in locating and analyzing promoters now allow extending functional genomics in silico far beyond identification of protein sequences into the complex regulatory structures and mechanisms of the genome. However, only first examples of this new type of approach are emerging at present and intensive further developments of bioinformatics tools will be required before such analysis can become large-scale routine in genomic sequence analysis. Nevertheless, the door to a new dimension of functional analysis of the genomic sequence is open. Finally, only the tight integration of the enormous amount of knowledge gained from proteins sequence analysis with the complementary information about gene regulation will afford us with a more complete picture of the networks than constitute life.

Mesh:

Year:  2002        PMID: 12542410

Source DB:  PubMed          Journal:  In Silico Biol        ISSN: 1386-6338


  8 in total

1.  Comprehensive quantitative analyses of the effects of promoter sequence elements on mRNA transcription.

Authors:  Michal Lapidot; Yitzhak Pilpel
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Dragon gene start finder: an advanced system for finding approximate locations of the start of gene transcriptional units.

Authors:  Vladimir B Bajic; Seng Hong Seah
Journal:  Genome Res       Date:  2003-07-17       Impact factor: 9.043

3.  Anorectal atresia and variants at predicted regulatory sites in candidate genes.

Authors:  Tonia C Carter; Denise M Kay; Marilyn L Browne; Aiyi Liu; Paul A Romitti; Devon Kuehn; Mary R Conley; Michele Caggana; Charlotte M Druschel; Lawrence C Brody; James L Mills
Journal:  Ann Hum Genet       Date:  2012-11-06       Impact factor: 1.670

4.  Dragon Gene Start Finder identifies approximate locations of the 5' ends of genes.

Authors:  Vladimir B Bajic; Seng Hong Seah
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

5.  A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation.

Authors:  Bas E Dutilh; Martijn A Huynen; Berend Snel
Journal:  BMC Genomics       Date:  2006-01-19       Impact factor: 3.969

6.  A multistep bioinformatic approach detects putative regulatory elements in gene promoters.

Authors:  Stefania Bortoluzzi; Alessandro Coppe; Andrea Bisognin; Cinzia Pizzi; Gian Antonio Danieli
Journal:  BMC Bioinformatics       Date:  2005-05-18       Impact factor: 3.169

7.  PromoterPlot: a graphical display of promoter similarities by pattern recognition.

Authors:  Alessandro Di Cara; Karsten Schmidt; Brian A Hemmings; Edward J Oakeley
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

8.  ABRAXAS (FAM175A) and Breast Cancer Susceptibility: No Evidence of Association in the Breast Cancer Family Registry.

Authors:  Anne-Laure Renault; Fabienne Lesueur; Yan Coulombe; Stéphane Gobeil; Penny Soucy; Yosr Hamdi; Sylvie Desjardins; Florence Le Calvez-Kelm; Maxime Vallée; Catherine Voegele; John L Hopper; Irene L Andrulis; Melissa C Southey; Esther M John; Jean-Yves Masson; Sean V Tavtigian; Jacques Simard
Journal:  PLoS One       Date:  2016-06-07       Impact factor: 3.240

  8 in total

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