Literature DB >> 12539950

On ontologies for biologists: the Gene Ontology--untangling the web.

Michael Ashburner1, Suzanna Lewis.   

Abstract

The mantra of the 'post-genomic' era is 'gene function'. Yet surprisingly little attention has been given to how functional and other information concerning genes is to be captured, made accessible to biologists or structured in a computable form. The aim of the Gene Ontology (GO) Consortium is to provide a framework for both the description and the organisation of such information. The GO Consortium is presently concerned with three structured controlled vocabularies which can be used to describe three discrete biological domains, building structured vocabularies which can be used to describe the molecular function, biological roles and cellular locations of gene products.

Mesh:

Year:  2002        PMID: 12539950

Source DB:  PubMed          Journal:  Novartis Found Symp        ISSN: 1528-2511


  43 in total

1.  Extension and integration of the gene ontology (GO): combining GO vocabularies with external vocabularies.

Authors:  David P Hill; Judith A Blake; Joel E Richardson; Martin Ringwald
Journal:  Genome Res       Date:  2002-12       Impact factor: 9.043

2.  Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes.

Authors:  Todd Wylie; John C Martin; Michael Dante; Makedonka Dautova Mitreva; Sandra W Clifton; Asif Chinwalla; Robert H Waterston; Richard K Wilson; James P McCarter
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  Identification of related gene/protein names based on an HMM of name variations.

Authors:  L Yeganova; L Smith; W J Wilbur
Journal:  Comput Biol Chem       Date:  2004-04       Impact factor: 2.877

Review 4.  Proteins: form and function.

Authors:  Roy D Sleator
Journal:  Bioeng Bugs       Date:  2012-03-01

Review 5.  Electrophysiological and gene expression profiling of neuronal cell types in mammalian neocortex.

Authors:  Kojiro Yano; Tatiana Subkhankulova; Frederick J Livesey; Hugh P C Robinson
Journal:  J Physiol       Date:  2006-07-13       Impact factor: 5.182

Review 6.  The neuron classification problem.

Authors:  Mihail Bota; Larry W Swanson
Journal:  Brain Res Rev       Date:  2007-05-26

7.  Protein interaction mapping: a Drosophila case study.

Authors:  Etienne Formstecher; Sandra Aresta; Vincent Collura; Alexandre Hamburger; Alain Meil; Alexandra Trehin; Céline Reverdy; Virginie Betin; Sophie Maire; Christine Brun; Bernard Jacq; Monique Arpin; Yohanns Bellaiche; Saverio Bellusci; Philippe Benaroch; Michel Bornens; Roland Chanet; Philippe Chavrier; Olivier Delattre; Valérie Doye; Richard Fehon; Gérard Faye; Thierry Galli; Jean-Antoine Girault; Bruno Goud; Jean de Gunzburg; Ludger Johannes; Marie-Pierre Junier; Vincent Mirouse; Ashim Mukherjee; Dora Papadopoulo; Franck Perez; Anne Plessis; Carine Rossé; Simon Saule; Dominique Stoppa-Lyonnet; Alain Vincent; Michael White; Pierre Legrain; Jérôme Wojcik; Jacques Camonis; Laurent Daviet
Journal:  Genome Res       Date:  2005-02-14       Impact factor: 9.043

8.  WebArrayDB: cross-platform microarray data analysis and public data repository.

Authors:  Xiao-Qin Xia; Michael McClelland; Steffen Porwollik; Wenzhi Song; Xianling Cong; Yipeng Wang
Journal:  Bioinformatics       Date:  2009-07-14       Impact factor: 6.937

9.  Clustering of DNA sequences in human promoters.

Authors:  Peter C FitzGerald; Andrey Shlyakhtenko; Alain A Mir; Charles Vinson
Journal:  Genome Res       Date:  2004-07-15       Impact factor: 9.043

10.  Ontologies as integrative tools for plant science.

Authors:  Ramona L Walls; Balaji Athreya; Laurel Cooper; Justin Elser; Maria A Gandolfo; Pankaj Jaiswal; Christopher J Mungall; Justin Preece; Stefan Rensing; Barry Smith; Dennis W Stevenson
Journal:  Am J Bot       Date:  2012-07-30       Impact factor: 3.844

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.