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Literature DB >> 12538268

Visualization and analysis of protein interactions.

Byong-Hyon Ju¹, Byungkyu Park, Jong H Park, Kyungsook Han.

Abstract

SUMMARY: We have developed a new program called InterViewer for drawing large-scale protein interaction networks in three-dimensional space. Unique features of InterViewer include (1) it is much faster than other recent implementations of drawing algorithms; (2) it can be used not only for visualizing protein interactions but also for analyzing them interactively; and (3) it provides an integrated framework for querying protein interaction databases and directly visualizes the query results. AVAILABILITY: http://wilab.inha.ac.kr/protein/

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Year: 2003 PMID： 12538268 DOI： 10.1093/bioinformatics/19.2.317

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

8 in total

Visualization and analysis of protein interactions.

1. WebInterViewer: visualizing and analyzing molecular interaction networks.

2. Application of approximate pattern matching in two dimensional spaces to grid layout for biochemical network maps.

3. Why should we care about molecular coevolution?

4. Non-linear mapping for exploratory data analysis in functional genomics.

5. Computational Prediction of Protein-Protein Interaction Networks: Algo-rithms and Resources.

6. FORG3D: force-directed 3D graph editor for visualization of integrated genome scale data.

7. Prediction of synergistic transcription factors by function conservation.

8. Visualisation and graph-theoretic analysis of a large-scale protein structural interactome.