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Literature DB >> 12538262

G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining.

K Arakawa¹, K Mori, K Ikeda, T Matsuzaki, Y Kobayashi, M Tomita.

Abstract

SUMMARY: G-language Genome Analysis Environment (G-language GAE) is an open source generic software package aimed for higher efficiency in bioinformatics analysis. G-language GAE has an interface as a set of Perl libraries for software development, and a graphical user interface for easy manipulation. Both Windows and Linux versions are available. AVAILABILITY: From http://www.g-language.org/ under GNU General Public License. CD-ROMs are distributed freely in major conferences.

Mesh：

Year: 2003 PMID： 12538262 DOI： 10.1093/bioinformatics/19.2.305

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

47 in total

1. Predicting plasmid promiscuity based on genomic signature.

Authors: Haruo Suzuki; Hirokazu Yano; Celeste J Brown; Eva M Top
Journal: J Bacteriol Date: 2010-09-17 Impact factor: 3.490

2. KPP: KEGG Pathway Painter.

Authors: Ganiraju Manyam; Aybike Birerdinc; Ancha Baranova
Journal: BMC Syst Biol Date: 2015-04-15

3. Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae.

Authors: Haruo Suzuki; Tristan Lefébure; Paulina Pavinski Bitar; Michael J Stanhope
Journal: BMC Genomics Date: 2012-01-24 Impact factor: 3.969

G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining.

1. Predicting plasmid promiscuity based on genomic signature.

2. KPP: KEGG Pathway Painter.

3. Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae.

4. Variation in the correlation of G + C composition with synonymous codon usage bias among bacteria.

5. Measure of synonymous codon usage diversity among genes in bacteria.

6. Comparison of correspondence analysis methods for synonymous codon usage in bacteria.

7. Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes.

8. The GC skew index: a measure of genomic compositional asymmetry and the degree of replicational selection.

9. A web server for interactive and zoomable Chaos Game Representation images.

10. Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API.