Literature DB >> 12527763

Basal transcriptional regulation of human damage-specific DNA-binding protein genes DDB1 and DDB2 by Sp1, E2F, N-myc and NF1 elements.

Anne F Nichols1, Toshiki Itoh, Francesca Zolezzi, Stephanie Hutsell, Stuart Linn.   

Abstract

The human DDB1 and DDB2 genes encode the 127 and 48 kDa subunits, respectively, of the damage-specific DNA-binding protein (DDB). Mutations in the DDB2 gene have been correlated with the hereditary disease xeroderma pigmentosum group E. We have investigated the proximal promoters of the DDB genes, both of which are G/C-rich and do not contain a TATA box. Transient expression analysis in HeLa cells using a luciferase reporter system indicated the presence of core promoters located within 292 bp (DDB1) and 220 bp (DDB2) upstream of the putative transcription initiation sites. Both core promoters contain multiple active Sp1 sites, with those of DDB1 at -123 to -115 and of DDB2 at -29 to -22 being critical determinants of promoter activity. In addition, an N-myc site at -56 to -51 for DDB1 is an essential transcription element, and mutations in a DDB1 NF-1 site at -104 to -92, a DDB2 NF-1 site at -68 to -56 and a DDB2 E2F site at +36 to +43 also reduce promoter activity. Taken together, these results suggest a regulation of basal transcription typical of cell cycle-regulated genes, and therefore support conjectures that the DDB heterodimer and/or its subunits have functions other than direct involvement in DNA repair.

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Year:  2003        PMID: 12527763      PMCID: PMC140516          DOI: 10.1093/nar/gkg152

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  49 in total

1.  Chromosomal localization and cDNA cloning of the genes (DDB1 and DDB2) for the p127 and p48 subunits of a human damage-specific DNA binding protein.

Authors:  R Dualan; T Brody; S Keeney; A F Nichols; A Admon; S Linn
Journal:  Genomics       Date:  1995-09-01       Impact factor: 5.736

2.  Reconstitution of human DNA repair excision nuclease in a highly defined system.

Authors:  D Mu; C H Park; T Matsunaga; D S Hsu; J T Reardon; A Sancar
Journal:  J Biol Chem       Date:  1995-02-10       Impact factor: 5.157

3.  The E6 oncoprotein encoded by human papillomavirus types 16 and 18 promotes the degradation of p53.

Authors:  M Scheffner; B A Werness; J M Huibregtse; A J Levine; P M Howley
Journal:  Cell       Date:  1990-12-21       Impact factor: 41.582

4.  Comparative analysis of binding of human damaged DNA-binding protein (XPE) and Escherichia coli damage recognition protein (UvrA) to the major ultraviolet photoproducts: T[c,s]T, T[t,s]T, T[6-4]T, and T[Dewar]T.

Authors:  J T Reardon; A F Nichols; S Keeney; C A Smith; J S Taylor; S Linn; A Sancar
Journal:  J Biol Chem       Date:  1993-10-05       Impact factor: 5.157

5.  Characterization of a human DNA damage binding protein implicated in xeroderma pigmentosum E.

Authors:  S Keeney; G J Chang; S Linn
Journal:  J Biol Chem       Date:  1993-10-05       Impact factor: 5.157

6.  Correction of the DNA repair defect in xeroderma pigmentosum group E by injection of a DNA damage-binding protein.

Authors:  S Keeney; A P Eker; T Brody; W Vermeulen; D Bootsma; J H Hoeijmakers; S Linn
Journal:  Proc Natl Acad Sci U S A       Date:  1994-04-26       Impact factor: 11.205

7.  A PCR-based method for high stringency screening of DNA libraries.

Authors:  D I Israel
Journal:  Nucleic Acids Res       Date:  1993-06-11       Impact factor: 16.971

8.  Xeroderma pigmentosum group E cells lack a nuclear factor that binds to damaged DNA.

Authors:  G Chu; E Chang
Journal:  Science       Date:  1988-10-28       Impact factor: 47.728

9.  Hepatitis B virus X protein interacts with a probable cellular DNA repair protein.

Authors:  T H Lee; S J Elledge; J S Butel
Journal:  J Virol       Date:  1995-02       Impact factor: 5.103

10.  Characterization of a Schizosaccharomyces pombe strain deleted for a sequence homologue of the human damaged DNA binding 1 (DDB1) gene.

Authors:  Francesca Zolezzi; Jill Fuss; Satoru Uzawa; Stuart Linn
Journal:  J Biol Chem       Date:  2002-08-13       Impact factor: 5.157

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  22 in total

1.  The role of the retinoblastoma/E2F1 tumor suppressor pathway in the lesion recognition step of nucleotide excision repair.

Authors:  Patrick S Lin; Lisa A McPherson; Aubrey Y Chen; Julien Sage; James M Ford
Journal:  DNA Repair (Amst)       Date:  2009-04-18

2.  Sp1 facilitates DNA double-strand break repair through a nontranscriptional mechanism.

Authors:  Kate Beishline; Crystal M Kelly; Beatrix A Olofsson; Sravanthi Koduri; Jacqueline Emrich; Roger A Greenberg; Jane Azizkhan-Clifford
Journal:  Mol Cell Biol       Date:  2012-07-23       Impact factor: 4.272

3.  Comprehensive pathway-based interrogation of genetic variations in the nucleotide excision DNA repair pathway and risk of bladder cancer.

Authors:  Jinliang Xing; Colin P Dinney; Sanjay Shete; Maosheng Huang; Michelle A Hildebrandt; Zhinan Chen; Jian Gu
Journal:  Cancer       Date:  2011-06-20       Impact factor: 6.860

4.  DDB2 suppresses epithelial-to-mesenchymal transition in colon cancer.

Authors:  Nilotpal Roy; Prashant V Bommi; Uppoor G Bhat; Shaumick Bhattacharjee; Indira Elangovan; Jing Li; Krushna C Patra; Dragana Kopanja; Adam Blunier; Richard Benya; Srilata Bagchi; Pradip Raychaudhuri
Journal:  Cancer Res       Date:  2013-04-22       Impact factor: 12.701

5.  Evolutionary and transcriptional analysis of karyopherin beta superfamily proteins.

Authors:  Yu Quan; Zhi-Liang Ji; Xiao Wang; Alan M Tartakoff; Tao Tao
Journal:  Mol Cell Proteomics       Date:  2008-03-18       Impact factor: 5.911

6.  DDB2 gene disruption leads to skin tumors and resistance to apoptosis after exposure to ultraviolet light but not a chemical carcinogen.

Authors:  Toshiki Itoh; Dragana Cado; Ryoichi Kamide; Stuart Linn
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-09       Impact factor: 11.205

7.  Identification of genes and candidate agents associated with pancreatic cancer.

Authors:  Bao-sheng Wang; Zhen Liu; Shao-long Sun; Yi Zhao
Journal:  Tumour Biol       Date:  2013-08-10

8.  DDB2 decides cell fate following DNA damage.

Authors:  Tanya Stoyanova; Nilotpal Roy; Dragana Kopanja; Srilata Bagchi; Pradip Raychaudhuri
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-16       Impact factor: 11.205

9.  Dephosphorylation of nucleophosmin by PP1β facilitates pRB binding and consequent E2F1-dependent DNA repair.

Authors:  Chiao Yun Lin; Bertrand Chin-Ming Tan; Hsuan Liu; Chii-Jiun Shih; Kun-Yi Chien; Chih-Li Lin; Benjamin Yat-Ming Yung
Journal:  Mol Biol Cell       Date:  2010-10-20       Impact factor: 4.138

Review 10.  Damaged DNA binding protein 2 in reactive oxygen species (ROS) regulation and premature senescence.

Authors:  Nilotpal Roy; Srilata Bagchi; Pradip Raychaudhuri
Journal:  Int J Mol Sci       Date:  2012-09-05       Impact factor: 6.208

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