Literature DB >> 12526847

In search of the minimal Escherichia coli genome.

Darren J Smalley1, Marvin Whiteley, Tyrrell Conway.   

Abstract

Recent plans announced for the systematic cataloging of the minimal Escherichia coli gene set, the phenotypes of all mutations, the expression levels of every transcript and gene product, and the interactions of all genetic loci or their gene products point the way towards a new frontier in the biology of model organisms. Powerful tools for this endeavor are emerging, and efforts to organize the E. coli community are under way. The anticipated benefit is a functional model of the bacterial cell.

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Year:  2003        PMID: 12526847     DOI: 10.1016/s0966-842x(02)00008-2

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  7 in total

Review 1.  Determination of the core of a minimal bacterial gene set.

Authors:  Rosario Gil; Francisco J Silva; Juli Peretó; Andrés Moya
Journal:  Microbiol Mol Biol Rev       Date:  2004-09       Impact factor: 11.056

2.  Toward a Synthetic Yeast Endosymbiont with a Minimal Genome.

Authors:  Angad P Mehta; Yeonjin Ko; Lubica Supekova; Kersi Pestonjamasp; Jack Li; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2019-08-26       Impact factor: 15.419

3.  Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome.

Authors:  Chengxin Zhang; Wei Zheng; Micah Cheng; Gilbert S Omenn; Peter L Freddolino; Yang Zhang
Journal:  J Proteome Res       Date:  2021-01-04       Impact factor: 4.466

Review 4.  Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications.

Authors:  Christopher M Whitford; Saskia Dymek; Denise Kerkhoff; Camilla März; Olga Schmidt; Maximilian Edich; Julian Droste; Boas Pucker; Christian Rückert; Jörn Kalinowski
Journal:  J Biol Eng       Date:  2018-08-14       Impact factor: 4.355

Review 5.  Genome-driven cell engineering review: in vivo and in silico metabolic and genome engineering.

Authors:  Sophie Landon; Joshua Rees-Garbutt; Lucia Marucci; Claire Grierson
Journal:  Essays Biochem       Date:  2019-07-03       Impact factor: 8.000

6.  From essential to persistent genes: a functional approach to constructing synthetic life.

Authors:  Carlos G Acevedo-Rocha; Gang Fang; Markus Schmidt; David W Ussery; Antoine Danchin
Journal:  Trends Genet       Date:  2012-12-06       Impact factor: 11.639

7.  The evolution of early cellular systems viewed through the lens of biological interactions.

Authors:  Anthony M Poole; Daniel Lundin; Kalle T Rytkönen
Journal:  Front Microbiol       Date:  2015-10-19       Impact factor: 5.640

  7 in total

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