Literature DB >> 12523999

Plant snoRNAs: functional evolution and new modes of gene expression.

John W S Brown1, Manuel Echeverria, Liang Hu Qu.   

Abstract

Small nucleolar RNAs (snoRNAs) are a well-characterized family of non-coding RNAs whose main function is rRNA modification. The diversity and complexity of this gene family continues to expand with the discovery of snoRNAs with non-rRNA or unknown targets. Plants contain more snoRNAs than other eukaryotes and have developed novel expression and processing strategies. The increased number of modifications, which will influence ribosome function, and the novel modes of expression might reflect the environmental conditions to which plants are exposed. Polyploidy and chromosomal rearrangements have generated multiple copies of snoRNA genes, allowing the generation of new snoRNAs for selection. The large snoRNA family in plants is an ideal model for investigation of mechanisms of evolution of gene families in plants.

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Year:  2003        PMID: 12523999     DOI: 10.1016/s1360-1385(02)00007-9

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  53 in total

1.  Novel non-coding RNAs in Dictyostelium discoideum and their expression during development.

Authors:  Anders Aspegren; Andrea Hinas; Pontus Larsson; Anders Larsson; Fredrik Söderbom
Journal:  Nucleic Acids Res       Date:  2004-08-27       Impact factor: 16.971

2.  Posttranscriptional gene silencing in nuclei.

Authors:  Paul Hoffer; Sergey Ivashuta; Olga Pontes; Alexa Vitins; Craig Pikaard; Andrew Mroczka; Nicholas Wagner; Toni Voelker
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-20       Impact factor: 11.205

3.  A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification.

Authors:  Xue-Hai Liang; Shai Uliel; Avraham Hury; Sarit Barth; Tirza Doniger; Ron Unger; Shulamit Michaeli
Journal:  RNA       Date:  2005-05       Impact factor: 4.942

Review 4.  Treasure hunt in an amoeba: non-coding RNAs in Dictyostelium discoideum.

Authors:  Andrea Hinas; Fredrik Söderbom
Journal:  Curr Genet       Date:  2007-03       Impact factor: 3.886

Review 5.  Ribosome Biogenesis in Plants: From Functional 45S Ribosomal DNA Organization to Ribosome Assembly Factors.

Authors:  Julio Sáez-Vásquez; Michel Delseny
Journal:  Plant Cell       Date:  2019-06-25       Impact factor: 11.277

6.  Fine-tuning of translation termination efficiency in Saccharomyces cerevisiae involves two factors in close proximity to the exit tunnel of the ribosome.

Authors:  Isabelle Hatin; Céline Fabret; Olivier Namy; Wayne A Decatur; Jean-Pierre Rousset
Journal:  Genetics       Date:  2007-05-04       Impact factor: 4.562

7.  Repressing the expression of the SUCROSE NONFERMENTING-1-RELATED PROTEIN KINASE gene in pea embryo causes pleiotropic defects of maturation similar to an abscisic acid-insensitive phenotype.

Authors:  Ruslana Radchuk; Volodymyr Radchuk; Winfriede Weschke; Ljudmilla Borisjuk; Hans Weber
Journal:  Plant Physiol       Date:  2005-12-16       Impact factor: 8.340

8.  Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.

Authors:  Wei Deng; Xiaopeng Zhu; Geir Skogerbø; Yi Zhao; Zhuo Fu; Yudong Wang; Housheng He; Lun Cai; Hong Sun; Changning Liu; Biao Li; Baoyan Bai; Jie Wang; Dong Jia; Shiwei Sun; Hang He; Yan Cui; Yu Wang; Dongbo Bu; Runsheng Chen
Journal:  Genome Res       Date:  2005-12-12       Impact factor: 9.043

9.  The high diversity of snoRNAs in plants: identification and comparative study of 120 snoRNA genes from Oryza sativa.

Authors:  Chun-Long Chen; Dan Liang; Hui Zhou; Min Zhuo; Yue-Qin Chen; Liang-Hu Qu
Journal:  Nucleic Acids Res       Date:  2003-05-15       Impact factor: 16.971

10.  Mining small RNA sequencing data: a new approach to identify small nucleolar RNAs in Arabidopsis.

Authors:  Ho-Ming Chen; Shu-Hsing Wu
Journal:  Nucleic Acids Res       Date:  2009-04-08       Impact factor: 16.971

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