Literature DB >> 12523654

Application of DNA microarrays in pharmacogenomics and toxicogenomics.

Khew-Voon Chin1, A N Tony Kong.   

Abstract

Many drugs or xenobiotics can induce specific or nonspecific cellular signal transduction events that activate various physiologic and pharmacologic responses including homeostasis, proliferation, differentiation, apoptosis, and necrosis. To minimize the insults caused by these xenobiotics, tissues and organs are equipped with protective mechanisms that either pump drugs out of the cells (e.g., the multidrug-resistant, mdr, family of proteins) or increase the level of detoxifying enzymes such as phase I and II drug-metabolizing enzymes (DMEs), after exposure to xenobiotics. This review discusses the molecular analysis of pharmaco- or toxicogenomic gene expression profiles following exposure to cancer chemotherapeutic and chemopreventive agents. We present the development of DNA microarray technology and its use in expression profiling of possible signal transduction events elicited by these compounds, and its potential future applications in drug discovery and development in the pharmaceutical industry.

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Year:  2002        PMID: 12523654     DOI: 10.1023/a:1021425004264

Source DB:  PubMed          Journal:  Pharm Res        ISSN: 0724-8741            Impact factor:   4.200


  29 in total

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Journal:  Cancer Res       Date:  1999-10-01       Impact factor: 12.701

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Journal:  Nature       Date:  2002-01-31       Impact factor: 49.962

3.  Nrf1 and Nrf2 positively and c-Fos and Fra1 negatively regulate the human antioxidant response element-mediated expression of NAD(P)H:quinone oxidoreductase1 gene.

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Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

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Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

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Journal:  Biochem Pharmacol       Date:  1989-04-15       Impact factor: 5.858

6.  Keap1 represses nuclear activation of antioxidant responsive elements by Nrf2 through binding to the amino-terminal Neh2 domain.

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Journal:  Genes Dev       Date:  1999-01-01       Impact factor: 11.361

7.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

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Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-15       Impact factor: 11.205

9.  Gene-expression profiles predict survival of patients with lung adenocarcinoma.

Authors:  David G Beer; Sharon L R Kardia; Chiang-Ching Huang; Thomas J Giordano; Albert M Levin; David E Misek; Lin Lin; Guoan Chen; Tarek G Gharib; Dafydd G Thomas; Michelle L Lizyness; Rork Kuick; Satoru Hayasaka; Jeremy M G Taylor; Mark D Iannettoni; Mark B Orringer; Samir Hanash
Journal:  Nat Med       Date:  2002-07-15       Impact factor: 53.440

10.  hMAF, a small human transcription factor that heterodimerizes specifically with Nrf1 and Nrf2.

Authors:  M G Marini; K Chan; L Casula; Y W Kan; A Cao; P Moi
Journal:  J Biol Chem       Date:  1997-06-27       Impact factor: 5.157

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  10 in total

1.  Effects of cardiotonic steroids on dermal collagen synthesis and wound healing.

Authors:  Nasser El-Okdi; Sleiman Smaili; Vanamala Raju; Amjad Shidyak; Shalini Gupta; Larisa Fedorova; Jihad Elkareh; Sankaridrug Periyasamy; Anna P Shapiro; M Bashar Kahaleh; Deepak Malhotra; Zijian Xie; Khew Voon Chin; Joseph I Shapiro
Journal:  J Appl Physiol (1985)       Date:  2008-05-15

2.  A glance at DNA microarray technology and applications.

Authors:  Amir Ata Saei; Yadollah Omidi
Journal:  Bioimpacts       Date:  2011-08-04

3.  Magnetic scanometric DNA microarray detection of methyl tertiary butyl ether degrading bacteria for environmental monitoring.

Authors:  Mei-Lin Chan; Gerardo Jaramillo; Krassimira R Hristova; David A Horsley
Journal:  Biosens Bioelectron       Date:  2010-09-15       Impact factor: 10.618

Review 4.  Advances in pharmacogenomic research and development.

Authors:  Jeanette J McCarthy
Journal:  Mol Biotechnol       Date:  2003-11       Impact factor: 2.695

Review 5.  Recent advances in 2D and 3D in vitro systems using primary hepatocytes, alternative hepatocyte sources and non-parenchymal liver cells and their use in investigating mechanisms of hepatotoxicity, cell signaling and ADME.

Authors:  Patricio Godoy; Nicola J Hewitt; Ute Albrecht; Melvin E Andersen; Nariman Ansari; Sudin Bhattacharya; Johannes Georg Bode; Jennifer Bolleyn; Christoph Borner; Jan Böttger; Albert Braeuning; Robert A Budinsky; Britta Burkhardt; Neil R Cameron; Giovanni Camussi; Chong-Su Cho; Yun-Jaie Choi; J Craig Rowlands; Uta Dahmen; Georg Damm; Olaf Dirsch; María Teresa Donato; Jian Dong; Steven Dooley; Dirk Drasdo; Rowena Eakins; Karine Sá Ferreira; Valentina Fonsato; Joanna Fraczek; Rolf Gebhardt; Andrew Gibson; Matthias Glanemann; Chris E P Goldring; María José Gómez-Lechón; Geny M M Groothuis; Lena Gustavsson; Christelle Guyot; David Hallifax; Seddik Hammad; Adam Hayward; Dieter Häussinger; Claus Hellerbrand; Philip Hewitt; Stefan Hoehme; Hermann-Georg Holzhütter; J Brian Houston; Jens Hrach; Kiyomi Ito; Hartmut Jaeschke; Verena Keitel; Jens M Kelm; B Kevin Park; Claus Kordes; Gerd A Kullak-Ublick; Edward L LeCluyse; Peng Lu; Jennifer Luebke-Wheeler; Anna Lutz; Daniel J Maltman; Madlen Matz-Soja; Patrick McMullen; Irmgard Merfort; Simon Messner; Christoph Meyer; Jessica Mwinyi; Dean J Naisbitt; Andreas K Nussler; Peter Olinga; Francesco Pampaloni; Jingbo Pi; Linda Pluta; Stefan A Przyborski; Anup Ramachandran; Vera Rogiers; Cliff Rowe; Celine Schelcher; Kathrin Schmich; Michael Schwarz; Bijay Singh; Ernst H K Stelzer; Bruno Stieger; Regina Stöber; Yuichi Sugiyama; Ciro Tetta; Wolfgang E Thasler; Tamara Vanhaecke; Mathieu Vinken; Thomas S Weiss; Agata Widera; Courtney G Woods; Jinghai James Xu; Kathy M Yarborough; Jan G Hengstler
Journal:  Arch Toxicol       Date:  2013-08-23       Impact factor: 5.153

6.  Integrative omics - An arsenal for drug discovery.

Authors:  Rahul Soloman Singh; Vani Angra; Ashutosh Singh; Gladson David Masih; Bikash Medhi
Journal:  Indian J Pharmacol       Date:  2022 Jan-Feb       Impact factor: 2.833

7.  Analysis of host response to bacterial infection using error model based gene expression microarray experiments.

Authors:  Dov J Stekel; Donatella Sarti; Victor Trevino; Lihong Zhang; Mike Salmon; Chris D Buckley; Mark Stevens; Mark J Pallen; Charles Penn; Francesco Falciani
Journal:  Nucleic Acids Res       Date:  2005-03-30       Impact factor: 16.971

Review 8.  New strategies in drug discovery.

Authors:  Eliot H Ohlstein; Anthony G Johnson; John D Elliott; Anne M Romanic
Journal:  Methods Mol Biol       Date:  2006

9.  Designing toxicogenomics studies that use DNA array technology.

Authors:  Robert R Delongchamp; Cruz Velasco; Varsha G Desai; Taewon Lee; James C Fuscoe
Journal:  Bioinform Biol Insights       Date:  2008-08-14

10.  Variability of DNA microarray gene expression profiles in cultured rat primary hepatocytes.

Authors:  Jun Xu; Xutao Deng; Victor Chan; Nancy Kelley-Loughnane; Brent W Harker; Leming Shi; Saber M Hussain; John M Frazier; Charles Wang
Journal:  Gene Regul Syst Bio       Date:  2007-11-18
  10 in total

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