Literature DB >> 12520044

PLMItRNA, a database on the heterogeneous genetic origin of mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes.

Guglielmo Rainaldi1, Mariateresa Volpicella, Flavio Licciulli, Sabino Liuni, Raffaele Gallerani, Luigi R Ceci.   

Abstract

The updated version of PLMItRNA reports information and multialignments on 609 genes and 34 tRNA molecules active in the mitochondria of Viridiplantae (27 Embryophyta and 10 Chlorophyta), and photosynthetic algae (one Cryptophyta, four Rhodophyta and two Stramenopiles). Colour-code based tables reporting the different genetic origin of identified genes allow hyper-textual link to single entries. Promoter sequences identified for tRNA genes in the mitochondrial genomes of Angiospermae are also reported. The PLMItRNA database is accessible at http://bighost.area.ba.cnr.it/PLMItRNA/.

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Year:  2003        PMID： 12520044      PMCID： PMC165527          DOI： 10.1093/nar/gkg080

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  10 in total

1.  PLMItRNA, a database for mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes.

Authors:  F Damiano; R Gallerani; S Liuni; F Licciulli; L R Ceci
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Compilation and analysis of plant mitochondrial promoter sequences: An illustration of a divergent evolution between monocot and dicot mitochondria.

Authors:  J Fey; L Maréchal-Drouard
Journal:  Biochem Biophys Res Commun       Date:  1999-03-16       Impact factor: 3.575

Review 3.  The RNA world of plant mitochondria.

Authors:  M Hoffmann; J Kuhn; K Däschner; S Binder
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  2001

4.  A small repeated sequence contains the transcription initiation sites for both trnfM and rrn26 in rice mitochondria.

Authors:  M Nakazono; N Tsutsumi; M Sugiura; A Hirai
Journal:  Plant Mol Biol       Date:  1995-05       Impact factor: 4.076

5.  A chloroplast derived trnH gene is expressed in the mitochondrial genome of gramineous plants.

Authors:  A Kanno; M Nakazono; A Hirai; T Kameya
Journal:  Plant Mol Biol       Date:  1997-05       Impact factor: 4.076

6.  The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor. Two radically different evolutionary patterns within green algae.

Authors:  M Turmel; C Lemieux; G Burger; B F Lang; C Otis; I Plante; M W Gray
Journal:  Plant Cell       Date:  1999-09       Impact factor: 11.277

7.  Transcription of two sunflower (Helianthus annuus L.) mitochondrial tRNA genes having different genetic origins.

Authors:  Fabrizio Damiano; Luigi Ruggiero Ceci; Luisa Siculella; Raffaele Gallerani
Journal:  Gene       Date:  2002-03-06       Impact factor: 3.688

8.  Comparative analysis of a recombining-repeat-sequence family in the mitochondrial genomes of wheat (Triticum aestivum L.) and rye (Secale cereale L.).

Authors:  M B Coulthart; D F Spencer; M W Gray
Journal:  Curr Genet       Date:  1993-03       Impact factor: 3.886

9.  A tRNA gene transcription initiation site is similar to mRNA and rRNA promoters in plant mitochondria.

Authors:  S Binder; A Brennicke
Journal:  Nucleic Acids Res       Date:  1993-11-11       Impact factor: 16.971

10.  Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wickerhamii. Gene content and genome organization.

Authors:  G Wolff; I Plante; B F Lang; U Kück; G Burger
Journal:  J Mol Biol       Date:  1994-03-18       Impact factor: 5.469
  10 in total
  2 in total

1.  A counterintuitive Mg2+-dependent and modification-assisted functional folding of mitochondrial tRNAs.

Authors:  Christopher I Jones; Angela C Spencer; Jennifer L Hsu; Linda L Spremulli; Susan A Martinis; Michele DeRider; Paul F Agris
Journal:  J Mol Biol       Date:  2006-07-27       Impact factor: 5.469

2.  Compilation of tRNA sequences and sequences of tRNA genes.

Authors:  Mathias Sprinzl; Konstantin S Vassilenko
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971
  2 in total

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