Literature DB >> 12519991

The Zebrafish Information Network (ZFIN): the zebrafish model organism database.

Judy Sprague1, Dave Clements, Tom Conlin, Pat Edwards, Ken Frazer, Kevin Schaper, Erik Segerdell, Peiran Song, Brock Sprunger, Monte Westerfield.   

Abstract

The Zebrafish Information Network (ZFIN) is a web based community resource that serves as a centralized location for the curation and integration of zebrafish genetic, genomic and developmental data. ZFIN is publicly accessible at http://zfin.org. ZFIN provides an integrated representation of mutants, genes, genetic markers, mapping panels, publications and community contact data. Recent enhancements to ZFIN include: (i) an anatomical dictionary that provides a controlled vocabulary of anatomical terms, grouped by developmental stages, that may be used to annotate and query gene expression data; (ii) gene expression data; (iii) expanded support for genome sequence; (iv) gene annotation using the standardized vocabulary of Gene Ontology (GO) terms that can be used to elucidate relationships between gene products in zebrafish and other organisms; and (v) collaborations with other databases (NCBI, Sanger Institute and SWISS-PROT) to provide standardization and interconnections based on shared curation.

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Year:  2003        PMID: 12519991      PMCID: PMC165474          DOI: 10.1093/nar/gkg027

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  2 in total

1.  Creating the gene ontology resource: design and implementation.

Authors: 
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

2.  The Zebrafish Information Network (ZFIN): a resource for genetic, genomic and developmental research.

Authors:  J Sprague; E Doerry; S Douglas; M Westerfield
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

  2 in total
  44 in total

1.  GOblet: a platform for Gene Ontology annotation of anonymous sequence data.

Authors:  Detlef Groth; Hans Lehrach; Steffen Hennig
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  Functional annotation of the Arabidopsis genome using controlled vocabularies.

Authors:  Tanya Z Berardini; Suparna Mundodi; Leonore Reiser; Eva Huala; Margarita Garcia-Hernandez; Peifen Zhang; Lukas A Mueller; Jungwoon Yoon; Aisling Doyle; Gabriel Lander; Nick Moseyko; Danny Yoo; Iris Xu; Brandon Zoeckler; Mary Montoya; Neil Miller; Dan Weems; Seung Y Rhee
Journal:  Plant Physiol       Date:  2004-06-01       Impact factor: 8.340

Review 3.  Using genomic databases for sequence-based biological discovery.

Authors:  Andreas D Baxevanis
Journal:  Mol Med       Date:  2003 Sep-Dec       Impact factor: 6.354

4.  An ontology for PACS integration.

Authors:  Charles E Kahn; David S Channin; Daniel L Rubin
Journal:  J Digit Imaging       Date:  2006-12       Impact factor: 4.056

5.  Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).

Authors:  Eric W Deutsch; Catherine A Ball; Jules J Berman; G Steven Bova; Alvis Brazma; Roger E Bumgarner; David Campbell; Helen C Causton; Jeffrey H Christiansen; Fabrice Daian; Delphine Dauga; Duncan R Davidson; Gregory Gimenez; Young Ah Goo; Sean Grimmond; Thorsten Henrich; Bernhard G Herrmann; Michael H Johnson; Martin Korb; Jason C Mills; Asa J Oudes; Helen E Parkinson; Laura E Pascal; Nicolas Pollet; John Quackenbush; Mirana Ramialison; Martin Ringwald; David Salgado; Susanna-Assunta Sansone; Gavin Sherlock; Christian J Stoeckert; Jason Swedlow; Ronald C Taylor; Laura Walashek; Anthony Warford; David G Wilkinson; Yi Zhou; Leonard I Zon; Alvin Y Liu; Lawrence D True
Journal:  Nat Biotechnol       Date:  2008-03       Impact factor: 54.908

6.  Animal trait ontology: The importance and usefulness of a unified trait vocabulary for animal species.

Authors:  L M Hughes; J Bao; Z-L Hu; V Honavar; J M Reecy
Journal:  J Anim Sci       Date:  2008-02-13       Impact factor: 3.159

7.  Complexity of cis-regulatory organization of six3a during forebrain and eye development in zebrafish.

Authors:  Chung-Hao Chao; Horng-Dar Wang; Chiou-Hwa Yuh
Journal:  BMC Dev Biol       Date:  2010-03-26       Impact factor: 1.978

8.  A MOD(ern) perspective on literature curation.

Authors:  Jodi Hirschman; Tanya Z Berardini; Harold J Drabkin; Doug Howe
Journal:  Mol Genet Genomics       Date:  2010-03-11       Impact factor: 3.291

9.  The teleost anatomy ontology: anatomical representation for the genomics age.

Authors:  Wasila M Dahdul; John G Lundberg; Peter E Midford; James P Balhoff; Hilmar Lapp; Todd J Vision; Melissa A Haendel; Monte Westerfield; Paula M Mabee
Journal:  Syst Biol       Date:  2010-03-29       Impact factor: 15.683

10.  Anti-cancer drug discovery: update and comparisons in yeast, Drosophila, and zebrafish.

Authors:  Guangxun Gao; Liang Chen; Chuanshu Huang
Journal:  Curr Mol Pharmacol       Date:  2014       Impact factor: 3.339

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