Literature DB >> 12519975

GOBASE--a database of mitochondrial and chloroplast information.

Emmet A O'Brien1, Elarbi Badidi, Ania Barbasiewicz, Cristina deSousa, B Franz Lang, Gertraud Burger.   

Abstract

GOBASE is a relational database containing integrated sequence, RNA secondary structure and biochemical and taxonomic information about organelles. GOBASE release 6 (summer 2002) contains over 130 000 mitochondrial sequences, an increase of 37% over the previous release, and more than 30 000 chloroplast sequences in a new auxiliary database. To handle this flood of new data, we have designed and implemented GOpop, a Java system for population and verification of the database. We have also implemented a more powerful and flexible user interface using the PHP programming language. http://megasun.bch.umontreal.ca/gobase/gobase.html.

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Substances：

Year:  2003        PMID： 12519975      PMCID： PMC165537          DOI： 10.1093/nar/gkg090

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  6 in total

1.  GOBASE: the organelle genome database.

Authors:  N Shimko; L Liu; B F Lang; G Burger
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; Barbara A Rapp; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  Building a genome database using an object-oriented approach.

Authors:  Anna Barbasiewicz; Lin Liu; B Franz Lang; Gertraud Burger
Journal:  In Silico Biol       Date:  2002

4.  The Organelle Genome Database Project (GOBASE).

Authors:  M Korab-Laskowska; P Rioux; N Brossard; T G Littlejohn; M W Gray; B F Lang; G Burger
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

5.  The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression.

Authors:  B Paquin; M J Laforest; L Forget; I Roewer; Z Wang; J Longcore; B F Lang
Journal:  Curr Genet       Date:  1997-05       Impact factor: 3.886

6.  A comparative genomics approach to the evolution of eukaryotes and their mitochondria.

Authors:  B F Lang; E Seif; M W Gray; C J O'Kelly; G Burger
Journal:  J Eukaryot Microbiol       Date:  1999 Jul-Aug       Impact factor: 3.346
  6 in total
  10 in total

1.  MitoProteome: mitochondrial protein sequence database and annotation system.

Authors:  Dawn Cotter; Purnima Guda; Eoin Fahy; Shankar Subramaniam
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  RNA-protein complexes that form in the spinach chloroplast atpI 5' untranslated region can be divided into two subcomplexes, each comprised of unique cis-elements and trans-factors.

Authors:  Patricia M Merhige; Dawn Both-Kim; Mark D Robida; Margaret J Hollingsworth
Journal:  Curr Genet       Date:  2005-11-04       Impact factor: 3.886

3.  The complete mitochondrial DNA sequence of the green alga Oltmannsiellopsis viridis: evolutionary trends of the mitochondrial genome in the Ulvophyceae.

Authors:  Jean-François Pombert; Philippe Beauchamp; Christian Otis; Claude Lemieux; Monique Turmel
Journal:  Curr Genet       Date:  2006-05-24       Impact factor: 3.886

4.  Molecular circumscription of the hornworts (Anthocerotophyta) based on the chloroplast DNA trnL-trnF region.

Authors:  Michael Stech; Dietmar Quandt; Wolfgang Frey
Journal:  J Plant Res       Date:  2003-09-02       Impact factor: 2.629

5.  CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes.

Authors:  Jinkui Cheng; Xu Zeng; Guomin Ren; Zhihua Liu
Journal:  BMC Bioinformatics       Date:  2013-03-14       Impact factor: 3.169

6.  The Rhodomonas salina mitochondrial genome: bacteria-like operons, compact gene arrangement and complex repeat region.

Authors:  Amy M Hauth; Uwe G Maier; B Franz Lang; Gertraud Burger
Journal:  Nucleic Acids Res       Date:  2005-08-05       Impact factor: 16.971

7.  ChloroplastDB: the Chloroplast Genome Database.

Authors:  Liying Cui; Narayanan Veeraraghavan; Alexander Richter; Kerr Wall; Robert K Jansen; Jim Leebens-Mack; Izabela Makalowska; Claude W dePamphilis
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

8.  GOBASE--a database of organelle and bacterial genome information.

Authors:  Emmet A O'Brien; Yue Zhang; LiuSong Yang; Eric Wang; Veronique Marie; B Franz Lang; Gertraud Burger
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

9.  GOBASE: an organelle genome database.

Authors:  Emmet A O'Brien; Yue Zhang; Eric Wang; Veronique Marie; Wole Badejoko; B Franz Lang; Gertraud Burger
Journal:  Nucleic Acids Res       Date:  2008-10-25       Impact factor: 16.971

10.  The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes.

Authors:  Jean-François Pombert; Claude Lemieux; Monique Turmel
Journal:  BMC Biol       Date:  2006-02-03       Impact factor: 7.431
  10 in total

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