Literature DB >> 12519771

How additives influence the refolding of immunoglobulin-folded proteins in a stepwise dialysis system. Spectroscopic evidence for highly efficient refolding of a single-chain Fv fragment.

Mitsuo Umetsu1, Kouhei Tsumoto, Masaki Hara, Kumar Ashish, Shuichiro Goda, Tadafumi Adschiri, Izumi Kumagai.   

Abstract

The gradual removal of the denaturing reagent guanidine HCl (GdnHCl) using stepwise dialysis with the introduction of an oxidizing reagent and l-arginine resulted in the highly efficient refolding of various denatured single-chain Fv fragments (scFvs) from inclusion bodies expressed in Escherichia coli. In this study, the influence of the additives on the intermediates in scFv refolding was carefully analyzed on the basis of the stepwise dialysis, and it was revealed that the additive effect critically changes the pathway of scFv refolding. Circular dichroism and tryptophan fluorescence emission spectroscopies demonstrated that distinct secondary and tertiary structures were formed upon dialysis from 2 m GdnHCl to 1 m GdnHCl, and 4,4'-dianilino-1,1'-binaphthyl-5,5'-disulfonic acid dipotassium salt binding analysis indicated that the addition of l-arginine to the stepwise dialysis system effectively stabilized the exposed hydrophobic area on the scFv. Quantification of the free thiol groups in the scFv by means of Ellman's assay revealed that there was a particular stage in which most of the free thiol groups were oxidized and that adding an oxidizing reagent (the oxidized form of glutathione, GSSG) at that stage was important for complete refolding of the scFv. The particular stage depended on the nature of the refolding solution, especially on whether l-arginine was present. Spontaneous folding at the 1 m GdnHCl stage resulted in a structure in which a free thiol group accessed to the proper one for correct disulfide linkage; however, the addition of l-arginine resulted in the formation of a partially folded intermediate without disulfide linkages. Mass spectrometry experiments on alkylated scFv were carried out at each stage to determine the effects of l-arginine. The spectroscopic studies revealed two different pathways for scFv refolding in the stepwise dialysis system, pathways that depended on whether l-arginine was present. Controlled coupling of the effects of GSSG and l-arginine led to the complete refolding of scFv in the stepwise dialysis.

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Year:  2003        PMID: 12519771     DOI: 10.1074/jbc.M212247200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  27 in total

1.  High-throughput automated refolding screening of inclusion bodies.

Authors:  Renaud Vincentelli; Stéphane Canaan; Valérie Campanacci; Christel Valencia; Damien Maurin; Frédéric Frassinetti; Loréna Scappucini-Calvo; Yves Bourne; Christian Cambillau; Christophe Bignon
Journal:  Protein Sci       Date:  2004-10       Impact factor: 6.725

2.  Production and Purification of a Novel Anti-TNF-α Single Chain Fragment Variable Antibody.

Authors:  Ali Akbar Alizadeh; Maryam Hamzeh-Mivehroud; Siavoush Dastmalchi
Journal:  Adv Pharm Bull       Date:  2015-12-31

3.  Microfluidic chips with multi-junctions: an advanced tool in recovering proteins from inclusion bodies.

Authors:  Hiroshi Yamaguchi; Masaya Miyazaki
Journal:  Bioengineered       Date:  2015-01-07       Impact factor: 3.269

4.  An overview and comparison of a recombinant antigen-binding fragment and an antigen-binding fragment from a monoclonal antibody against wogonin glucuronide.

Authors:  Madan Kumar Paudel; Seiichi Sakamoto; Hiroyuki Tanaka; Satoshi Morimoto
Journal:  J Nat Med       Date:  2017-06-16       Impact factor: 2.343

5.  Ternary system of solution additives with arginine and salt for refolding of beta-galactosidase.

Authors:  Akiko Fujimoto; Atsushi Hirano; Kentaro Shiraki
Journal:  Protein J       Date:  2010-04       Impact factor: 2.371

6.  Single-chain variable fragment antibody against ginsenoside Re as an effective tool for the determination of ginsenosides in various ginsengs.

Authors:  Benyakan Pongkitwitoon; Seiichi Sakamoto; Osamu Morinaga; Thaweesak Juengwatanatrakul; Yukihiro Shoyama; Hiroyuki Tanaka; Satoshi Morimoto
Journal:  J Nat Med       Date:  2010-08-14       Impact factor: 2.343

7.  Computational de novo design of antibodies binding to a peptide with high affinity.

Authors:  Venkata Giridhar Poosarla; Tong Li; Boon Chong Goh; Klaus Schulten; Thomas K Wood; Costas D Maranas
Journal:  Biotechnol Bioeng       Date:  2017-02-02       Impact factor: 4.530

8.  Solubility of disulfide-bonded proteins in the cytoplasm of Escherichia coli and its "oxidizing" mutant.

Authors:  Sheng Xiong; Yi-Fei Wang; Xiang-Rong Ren; Bing Li; Mei-Ying Zhang; Yong Luo; Ling Zhang; Qiu-Ling Xie; Kuan-Yuan Su
Journal:  World J Gastroenterol       Date:  2005-02-21       Impact factor: 5.742

9.  Contributions of a disulfide bond to the structure, stability, and dimerization of human IgG1 antibody CH3 domain.

Authors:  Arnold McAuley; Jaby Jacob; Carl G Kolvenbach; Kimberly Westland; Hyo Jin Lee; Stephen R Brych; Douglas Rehder; Gerd R Kleemann; David N Brems; Masazumi Matsumura
Journal:  Protein Sci       Date:  2008-01       Impact factor: 6.725

10.  Trans-cyclohexanediamines prevent thermal inactivation of protein: role of hydrophobic and electrostatic interactions.

Authors:  Atsushi Hirano; Hiroyuki Hamada; Kentaro Shiraki
Journal:  Protein J       Date:  2008-06       Impact factor: 2.371

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