Literature DB >> 12515503

High-accuracy residual 1HN-13C and 1HN-1HN dipolar couplings in perdeuterated proteins.

Sebastian Meier1, Daniel Häussinger, Pernille Jensen, Marco Rogowski, Stephan Grzesiek.   

Abstract

Truncation by the presence of many short-range residual dipolar couplings (RDCs) hinders the observation of long-range RDCs in weakly aligned biomacromolecules. Perdeuteration of proteins followed by reprotonation of labile hydrogen positions greatly alleviates this problem. Here we show that for small perdeuterated proteins, a large number (up to 10 in protein G) of long-range RDCs to 13C and 1HN can be observed from individual amide protons. The 1HN <--> 13C RDCs comprise correlations to 13Calpha, 13Cbeta, and 13C' nuclei of the same and the preceding amino acid, as well as 13C' nuclei of hydrogen-bonded amino acids. The accuracy of the coupling constants is very high and defines individual internuclear distances to within few picometers. Deviations between measured RDC values and values predicted from the 1.1 A crystal structure of protein G are mainly found in two surface-exposed loop regions. The deviations show a strong correlation to the B-factor of the crystal structure.

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Year:  2003        PMID: 12515503     DOI: 10.1021/ja028740q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  Improved detection of long-range residual dipolar couplings in weakly aligned samples by Lee-Goldburg decoupling of homonuclear dipolar truncation.

Authors:  Pernille Jensen; Hans-Jürgen Sass; Stephan Grzesiek
Journal:  J Biomol NMR       Date:  2004-12       Impact factor: 2.835

2.  Measurement of eight scalar and dipolar couplings for methine-methylene pairs in proteins and nucleic acids.

Authors:  Emeric Miclet; Jérôme Boisbouvier; Ad Bax
Journal:  J Biomol NMR       Date:  2005-03       Impact factor: 2.835

3.  Identification of slow correlated motions in proteins using residual dipolar and hydrogen-bond scalar couplings.

Authors:  Guillaume Bouvignies; Pau Bernadó; Sebastian Meier; Kyuil Cho; Stephan Grzesiek; Rafael Brüschweiler; Martin Blackledge
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-19       Impact factor: 11.205

4.  Top-down approach in protein RDC data analysis: de novo estimation of the alignment tensor.

Authors:  Kang Chen; Nico Tjandra
Journal:  J Biomol NMR       Date:  2007-06-26       Impact factor: 2.835

5.  Very large residual dipolar couplings from deuterated ubiquitin.

Authors:  Joshua M Ward; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2012-07-25       Impact factor: 2.835

6.  Accurate measurement of 15N-13C residual dipolar couplings in nucleic acids.

Authors:  Christopher P Jaroniec; Jérôme Boisbouvier; Izabela Tworowska; Edward P Nikonowicz; Ad Bax
Journal:  J Biomol NMR       Date:  2005-03       Impact factor: 2.835

7.  Measurement of residual dipolar couplings from 1Halpha to 13Calpha and 15N using a simple HNCA-based experiment.

Authors:  Perttu Permi
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

Review 8.  Hybrid Approaches to Structural Characterization of Conformational Ensembles of Complex Macromolecular Systems Combining NMR Residual Dipolar Couplings and Solution X-ray Scattering.

Authors:  Vincenzo Venditti; Timothy K Egner; G Marius Clore
Journal:  Chem Rev       Date:  2016-01-07       Impact factor: 60.622

Review 9.  Biological functions of melanoma-associated antigens.

Authors:  Jiang Xiao; Hong-Song Chen
Journal:  World J Gastroenterol       Date:  2004-07-01       Impact factor: 5.742

10.  Measurement of imino 1H-1H residual dipolar couplings in RNA.

Authors:  Michael P Latham; Arthur Pardi
Journal:  J Biomol NMR       Date:  2008-12-09       Impact factor: 2.835

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