Literature DB >> 12511791

The MXAN procedure: a new method for analysing the XANES spectra of metalloproteins to obtain structural quantitative information.

M Benfatto1, S Della Longa, C R Natoli.   

Abstract

The first quantitative analyses are reported of the Fe K-edge polarized X-ray absorption near-edge structure (XANES) of a single crystal of the iron protein carbonmonoxy-myoglobin (MbCO) and of its cryogenic photoproduct Mb*CO. The CO-Fe-heme local structure has been determined using a novel fitting procedure, named MXAN, which is able to fit the XANES part (from the edge to about 200 eV) of experimental X-ray absorption data. This method is based on the comparison between the experimental spectrum and several theoretical spectra that are generated by changing the relevant geometrical parameters of the site around the absorbing atom. The theoretical spectra are derived in the framework of the full multiple-scattering approach. The MXAN procedure is able to recover information about the symmetry and atomic distances, and the solution is found to be independent of the starting conditions. The extracted local structure of Mb*CO includes an Fe-CO distance of 3.08 (7) A, with a tilting angle between the heme normal and the Fe-C vector of 37 (7) degrees and a bending angle between the Fe-C vector and the C-O bond of 31 (5) degrees

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Year:  2002        PMID: 12511791     DOI: 10.1107/s0909049502018137

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  12 in total

1.  A high-resolution XAS study of aqueous Cu(II) in liquid and frozen solutions: pyramidal, polymorphic, and non-centrosymmetric.

Authors:  Patrick Frank; Maurizio Benfatto; Munzarin Qayyam; Britt Hedman; Keith O Hodgson
Journal:  J Chem Phys       Date:  2015-02-28       Impact factor: 3.488

2.  The X-ray absorption spectroscopic model of the copper(II) imidazole complex ion in liquid aqueous solution: a strongly solvated square pyramid.

Authors:  Patrick Frank; Maurizio Benfatto; Britt Hedman; Keith O Hodgson
Journal:  Inorg Chem       Date:  2012-02-08       Impact factor: 5.165

3.  Probing the local electronic and geometric properties of the heme iron center in a H-NOX domain.

Authors:  Zhou Dai; Elizabeth M Boon
Journal:  J Inorg Biochem       Date:  2011-03-13       Impact factor: 4.155

4.  High quality x-ray absorption spectroscopy measurements with long energy range at high pressure using diamond anvil cell.

Authors:  Xinguo Hong; Matthew Newville; Vitali B Prakapenka; Mark L Rivers; Stephen R Sutton
Journal:  Rev Sci Instrum       Date:  2009-07       Impact factor: 1.523

5.  K-edge XANES investigation of octakis(DMSO)lanthanoid(III) complexes in DMSO solution and solid iodides.

Authors:  Paola D'Angelo; Valentina Migliorati; Riccardo Spezia; Simone De Panfilis; Ingmar Persson; Andrea Zitolo
Journal:  Phys Chem Chem Phys       Date:  2013-05-09       Impact factor: 3.676

6.  Structural and chemical evolution in layered oxide cathodes of lithium-ion batteries revealed by synchrotron techniques.

Authors:  Guannan Qian; Junyang Wang; Hong Li; Zi-Feng Ma; Piero Pianetta; Linsen Li; Xiqian Yu; Yijin Liu
Journal:  Natl Sci Rev       Date:  2021-08-17       Impact factor: 17.275

7.  Dissociation of Pyridinethiolate Ligands during Hydrogen Evolution Reactions of Ni-Based Catalysts: Evidence from X-ray Absorption Spectroscopy.

Authors:  Kathryn Ledbetter; Christopher B Larsen; Hyeongtaek Lim; Marija R Zoric; Sergey Koroidov; C Das Pemmaraju; Kelly J Gaffney; Amy A Cordones
Journal:  Inorg Chem       Date:  2022-06-22       Impact factor: 5.436

8.  Structural features that govern enzymatic activity in carbonic anhydrase from a low-temperature adapted fish, Chionodraco hamatus.

Authors:  Stefano Marino; Kuniko Hayakawa; Keisuke Hatada; Maurizio Benfatto; Antonia Rizzello; Michele Maffia; Luigi Bubacco
Journal:  Biophys J       Date:  2007-06-15       Impact factor: 4.033

9.  The x-ray absorption spectroscopy model of solvation about sulfur in aqueous L-cysteine.

Authors:  Ritimukta Sarangi; Patrick Frank; Maurizio Benfatto; Silvia Morante; Velia Minicozzi; Britt Hedman; Keith O Hodgson
Journal:  J Chem Phys       Date:  2012-11-28       Impact factor: 3.488

10.  Geometric structure determination of N694C lipoxygenase: a comparative near-edge X-ray absorption spectroscopy and extended X-ray absorption fine structure study.

Authors:  Ritimukta Sarangi; Rosalie K Hocking; Michael L Neidig; Maurizio Benfatto; Theodore R Holman; Edward I Solomon; Keith O Hodgson; Britt Hedman
Journal:  Inorg Chem       Date:  2008-12-15       Impact factor: 5.165

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