Literature DB >> 12504751

A cross-platform public domain PC image-analysis program for the comet assay.

Krzysztof Końca1, Anna Lankoff, Anna Banasik, Halina Lisowska, Tomasz Kuszewski, Stanisław Góźdź, Zbigniew Koza, Andrzej Wojcik.   

Abstract

The single-cell gel electrophoresis, also known as the comet assay, has gained wide-spread popularity as a simple and reliable method to measure genotoxic and cytotoxic effects of physical and chemical agents as well as kinetics of DNA repair. Cells are generally stained with fluorescent dyes. The analysis of comets--damaged cells which form a typical comet-shaped pattern--is greatly facilitated by the use of a computer image-analysis program. Although several image-analysis programs are available commercially, they are expensive and their source codes are not provided. For Macintosh computers a cost-free public domain macro is available on the Internet. No ready for use, cost-free program exists for the PC platform. We have, therefore, developed such a public domain program under the GNU license for PC computers. The program is called CASP and can be run on a variety of hardware and software platforms. Its practical merit was tested on human lymphocytes exposed to gamma-rays and found to yield reproducible results. The binaries for Windows 95 and Linux, together with the source code can be obtained from: http://www.casp.of.pl.

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Year:  2003        PMID: 12504751     DOI: 10.1016/s1383-5718(02)00251-6

Source DB:  PubMed          Journal:  Mutat Res        ISSN: 0027-5107            Impact factor:   2.433


  159 in total

1.  The RASSF1A tumor suppressor regulates XPA-mediated DNA repair.

Authors:  Howard Donninger; Jennifer Clark; Francesca Rinaldo; Nicholas Nelson; Thibaut Barnoud; M Lee Schmidt; Katharine R Hobbing; Michele D Vos; Brian Sils; Geoffrey J Clark
Journal:  Mol Cell Biol       Date:  2014-11-03       Impact factor: 4.272

2.  Automated segmentation of comet assay images using Gaussian filtering and fuzzy clustering.

Authors:  Mario Sansone; Olga Zeni; Giovanni Esposito
Journal:  Med Biol Eng Comput       Date:  2012-03-09       Impact factor: 2.602

3.  Metabolic responses induced by DNA damage and poly (ADP-ribose) polymerase (PARP) inhibition in MCF-7 cells.

Authors:  Vijesh J Bhute; Sean P Palecek
Journal:  Metabolomics       Date:  2015-07-30       Impact factor: 4.290

4.  Nucleosomes effectively shield DNA from radiation damage in living cells.

Authors:  Francesca Brambilla; Jose Manuel Garcia-Manteiga; Emanuele Monteleone; Lena Hoelzen; Angelica Zocchi; Alessandra Agresti; Marco E Bianchi
Journal:  Nucleic Acids Res       Date:  2020-09-18       Impact factor: 16.971

5.  Transgenic overexpression of neuroglobin attenuates formation of smoke-inhalation-induced oxidative DNA damage, in vivo, in the mouse brain.

Authors:  Heung Man Lee; George H Greeley; Ella W Englander
Journal:  Free Radic Biol Med       Date:  2011-09-29       Impact factor: 7.376

6.  Radiation protection by Terminalia chebula: some mechanistic aspects.

Authors:  Nitin Motilal Gandhi; Cherupally Krishnan Krishnan Nair
Journal:  Mol Cell Biochem       Date:  2005-09       Impact factor: 3.396

7.  Induction of DNA base damage and strand breaks in peripheral erythrocytes and the underlying mechanism in goldfish (Carassius auratus) exposed to monocrotophos.

Authors:  Fei Zhao; Bai Wang; Xiaona Zhang; Hua Tian; Wei Wang; Shaoguo Ru
Journal:  Fish Physiol Biochem       Date:  2015-02-10       Impact factor: 2.794

8.  Myeloperoxidase-dependent oxidation of etoposide in human myeloid progenitor CD34+ cells.

Authors:  Irina I Vlasova; Wei-Hong Feng; Julie P Goff; Angela Giorgianni; Duc Do; Susanne M Gollin; Dale W Lewis; Valerian E Kagan; Jack C Yalowich
Journal:  Mol Pharmacol       Date:  2010-11-19       Impact factor: 4.436

9.  Preferential radioprotection to DNA of normal tissues by ferulic acid under ex vivo and in vivo conditions in tumor bearing mice.

Authors:  Dharmendra Kumar Maurya; Cherupally Krishnan Krishnan Nair
Journal:  Mol Cell Biochem       Date:  2006-02-14       Impact factor: 3.396

10.  Increased cytotoxic and genotoxic tolerance of Eisenia fetida (Oligochaeta) to cadmium after long-term exposure.

Authors:  P Voua Otomo; S A Reinecke
Journal:  Ecotoxicology       Date:  2009-09-22       Impact factor: 2.823

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