Literature DB >> 12503319

Restriction enzyme recognition sequence search program.

Kyle P Ellrott1, Julie K A Kasarjian, Tao Jiang, Junichi Ryu.   

Abstract

A critical and difficult part of characterizing restriction enzymes and methylases is the identification of recognition sequences. To simplify this process, we have developed a plasmid transformation method along with a computer program named RM search that determines the exact recognition sequences for given restriction and modification systems.

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Year:  2002        PMID： 12503319     DOI： 10.2144/02336bc02

Source DB:  PubMed          Journal:  Biotechniques        ISSN： 0736-6205            Impact factor:   1.993


  8 in total

1.  The recognition and modification sites for the bacterial type I restriction systems KpnAI, StySEAI, StySENI and StySGI.

Authors:  Julie K A Kasarjian; Masumi Hidaka; Takashi Horiuchi; Masatake Iida; Junichi Ryu
Journal:  Nucleic Acids Res       Date:  2004-06-15       Impact factor: 16.971

2.  New restriction enzymes discovered from Escherichia coli clinical strains using a plasmid transformation method.

Authors:  Julie K A Kasarjian; Masatake Iida; Junichi Ryu
Journal:  Nucleic Acids Res       Date:  2003-03-01       Impact factor: 16.971

3.  Characterization of a restriction modification system from the commensal Escherichia coli strain A0 34/86 (O83:K24:H31).

Authors:  Marie Weiserová; Junichi Ryu
Journal:  BMC Microbiol       Date:  2008-06-27       Impact factor: 3.605

4.  KpnBI is the prototype of a new family (IE) of bacterial type I restriction-modification system.

Authors:  V Chin; V Valinluck; S Magaki; J Ryu
Journal:  Nucleic Acids Res       Date:  2004-10-08       Impact factor: 16.971

5.  A model for the evolution of prokaryotic DNA restriction-modification systems based upon the structural malleability of Type I restriction-modification enzymes.

Authors:  Edward K M Bower; Laurie P Cooper; Gareth A Roberts; John H White; Yvette Luyten; Richard D Morgan; David T F Dryden
Journal:  Nucleic Acids Res       Date:  2018-09-28       Impact factor: 16.971

6.  Four new type I restriction enzymes identified in Escherichia coli clinical isolates.

Authors:  Julie K A Kasarjian; Yoshiaki Kodama; Masatake Iida; Katsura Matsuda; Junichi Ryu
Journal:  Nucleic Acids Res       Date:  2005-07-21       Impact factor: 16.971

7.  Quick identification of Type I restriction enzyme isoschizomers using newly developed pTypeI and reference plasmids.

Authors:  Junichi Ryu; Edward Rowsell
Journal:  Nucleic Acids Res       Date:  2008-06-18       Impact factor: 16.971

8.  Impact of target site distribution for Type I restriction enzymes on the evolution of methicillin-resistant Staphylococcus aureus (MRSA) populations.

Authors:  Gareth A Roberts; Patrick J Houston; John H White; Kai Chen; Augoustinos S Stephanou; Laurie P Cooper; David T F Dryden; Jodi A Lindsay
Journal:  Nucleic Acids Res       Date:  2013-06-14       Impact factor: 16.971
  8 in total

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