Literature DB >> 12502353

First X-ray cocrystal structure of a bacterial FabH condensing enzyme and a small molecule inhibitor achieved using rational design and homology modeling.

Robert A Daines1, Israil Pendrak, Kelvin Sham, Glenn S Van Aller, Alex K Konstantinidis, John T Lonsdale, Cheryl A Janson, Xiayang Qiu, Martin Brandt, Sanjay S Khandekar, Carol Silverman, Martha S Head.   

Abstract

The first cocrystal structure of a bacterial FabH condensing enzyme and a small molecule inhibitor is reported. The inhibitor was obtained by rational modification of a high throughput screening lead with the aid of a S. pneumoniae FabH homology model. This homology model was used to design analogues that would have both high affinity for the enzyme and appropriate aqueous solubility to facilitate cocrystallization studies.

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Year:  2003        PMID: 12502353     DOI: 10.1021/jm025571b

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  15 in total

1.  Essential bacterial functions encoded by gene pairs.

Authors:  Helena B Thomaides; Ella J Davison; Lisa Burston; Hazel Johnson; David R Brown; Alison C Hunt; Jeffery Errington; Lloyd Czaplewski
Journal:  J Bacteriol       Date:  2006-11-17       Impact factor: 3.490

2.  Discovery of FabH/FabF inhibitors from natural products.

Authors:  Katherine Young; Hiranthi Jayasuriya; John G Ondeyka; Kithsiri Herath; Chaowei Zhang; Srinivas Kodali; Andrew Galgoci; Ronald Painter; Vickie Brown-Driver; Robert Yamamoto; Lynn L Silver; Yingcong Zheng; Judith I Ventura; Janet Sigmund; Sookhee Ha; Angela Basilio; Francisca Vicente; José Rubén Tormo; Fernando Pelaez; Phil Youngman; Doris Cully; John F Barrett; Dennis Schmatz; Sheo B Singh; Jun Wang
Journal:  Antimicrob Agents Chemother       Date:  2006-02       Impact factor: 5.191

3.  Molecular dynamics and docking simulations as a proof of high flexibility in E. coli FabH and its relevance for accurate inhibitor modeling.

Authors:  Yunierkis Pérez-Castillo; Matheus Froeyen; Miguel Angel Cabrera-Pérez; Ann Nowé
Journal:  J Comput Aided Mol Des       Date:  2011-04-23       Impact factor: 3.686

4.  Toward the computer-aided discovery of FabH inhibitors. Do predictive QSAR models ensure high quality virtual screening performance?

Authors:  Yunierkis Pérez-Castillo; Maykel Cruz-Monteagudo; Cosmin Lazar; Jonatan Taminau; Mathy Froeyen; Miguel Angel Cabrera-Pérez; Ann Nowé
Journal:  Mol Divers       Date:  2014-03-27       Impact factor: 2.943

5.  Conformational diversity of bacterial FabH: implications for molecular recognition specificity.

Authors:  Anuradha Mittal; Michael E Johnson
Journal:  J Mol Graph Model       Date:  2014-11-15       Impact factor: 2.518

6.  Differences in substrate specificity of V. cholerae FabH enzymes suggest new approaches for the development of novel antibiotics and biofuels.

Authors:  Jing Hou; Heping Zheng; Wen-Shyong Tzou; David R Cooper; Maksymilian Chruszcz; Mahendra D Chordia; Keehwan Kwon; Marek Grabowski; Wladek Minor
Journal:  FEBS J       Date:  2018-06-30       Impact factor: 5.542

7.  1,2-dithiole-3-ones as potent inhibitors of the bacterial 3-ketoacyl acyl carrier protein synthase III (FabH).

Authors:  Xin He; Anne McElwee Reeve; Umesh R Desai; Glen E Kellogg; Kevin A Reynolds
Journal:  Antimicrob Agents Chemother       Date:  2004-08       Impact factor: 5.191

8.  Discovery of platencin, a dual FabF and FabH inhibitor with in vivo antibiotic properties.

Authors:  Jun Wang; Srinivas Kodali; Sang Ho Lee; Andrew Galgoci; Ronald Painter; Karen Dorso; Fred Racine; Mary Motyl; Lorraine Hernandez; Elizabeth Tinney; Steven L Colletti; Kithsiri Herath; Richard Cummings; Oscar Salazar; Ignacio González; Angela Basilio; Francisca Vicente; Olga Genilloud; Fernando Pelaez; Hiranthi Jayasuriya; Katherine Young; Doris F Cully; Sheo B Singh
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-24       Impact factor: 11.205

9.  Unsymmetric aryl-alkyl disulfide growth inhibitors of methicillin-resistant Staphylococcus aureus and Bacillus anthracis.

Authors:  Edward Turos; Kevin D Revell; Praveen Ramaraju; Danielle A Gergeres; Kerriann Greenhalgh; Ashley Young; Nalini Sathyanarayan; Sonja Dickey; Daniel Lim; Mamoun M Alhamadsheh; Kevin Reynolds
Journal:  Bioorg Med Chem       Date:  2008-05-17       Impact factor: 3.641

Review 10.  3-Ketoacyl-ACP synthase (KAS) III homologues and their roles in natural product biosynthesis.

Authors:  Risa Nofiani; Benjamin Philmus; Yosi Nindita; Taifo Mahmud
Journal:  Medchemcomm       Date:  2019-04-29       Impact factor: 3.597

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