Literature DB >> 12500541

[The context organization of functional regions in yeast genes with high-level expression].

A V Kochetov1, A Sarai, D G Vorob'ev, N A Kolchanov.   

Abstract

With the example of yeast genes, context organization was compared for functional gene regions (promoter, 5'-UTR, 3'-UTR) and tested for association with the level of gene expression. Several parameters (nucleotide composition, dinucletoide content bias) proved to correlate with expression level, each functional region having its specific features. Context optimization of a functional region was assumed to be essential for highly efficient interaction with the expression system of the cell. Specific context features were considered as dispersed signals important for high-level gene expression.

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Year:  2002        PMID: 12500541

Source DB:  PubMed          Journal:  Mol Biol (Mosk)        ISSN: 0026-8984


  3 in total

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Authors:  Svetlana A Shabalina; Aleksey Y Ogurtsov; Igor B Rogozin; Eugene V Koonin; David J Lipman
Journal:  Nucleic Acids Res       Date:  2004-03-18       Impact factor: 16.971

Review 2.  The mammalian transcriptome and the function of non-coding DNA sequences.

Authors:  Svetlana A Shabalina; Nikolay A Spiridonov
Journal:  Genome Biol       Date:  2004-03-25       Impact factor: 13.583

3.  Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms.

Authors:  Peter A C 't Hoen; Yavuz Ariyurek; Helene H Thygesen; Erno Vreugdenhil; Rolf H A M Vossen; Renée X de Menezes; Judith M Boer; Gert-Jan B van Ommen; Johan T den Dunnen
Journal:  Nucleic Acids Res       Date:  2008-10-15       Impact factor: 16.971

  3 in total

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