Literature DB >> 12499544

Atomic resolution structure of Erwinia chrysanthemi L-asparaginase.

Jacek Lubkowski1, Miroslawa Dauter, Khosrow Aghaiypour, Alexander Wlodawer, Zbigniew Dauter.   

Abstract

An X-ray structure of L-asparaginase from Erwinia chrysanthemi (ErA) has been refined at 1 A resolution to an R factor of below 0.1, using data collected on a synchrotron source. With four molecules of the enzyme consisting of 327 amino acids each, this crystal contains one of the largest asymmetric units of a protein refined to date at atomic resolution. Previously, structures of ErA and of related enzymes from other bacterial sources have been refined at resolutions not exceeding 1.7 A; thus, the present structure represents a very significant improvement in the quality of the available models of these proteins and should provide a good basis for future studies of the conformational variability of proteins, identification of subtle conformational features and corroboration of the stereochemical libraries, amongst other things. L-Asparaginases, which are enzymes that catalyze the hydrolysis of L-asparagine to aspartic acid, have been used for over 30 y as therapeutic agents in the treatment of acute childhood lymphoblastic leukemia, although the details of the enzymatic reaction and substrate specificity have not yet been completely elucidated. This atomic resolution structure is a step in that direction.

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Year:  2002        PMID: 12499544     DOI: 10.1107/s0907444902019443

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  14 in total

Review 1.  Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures.

Authors:  Alexander Wlodawer; Wladek Minor; Zbigniew Dauter; Mariusz Jaskolski
Journal:  FEBS J       Date:  2007-11-23       Impact factor: 5.542

2.  Crystallization and preliminary crystallographic analysis of L-asparaginase from Erwinia carotovora.

Authors:  Linnea E K Wikman; Julya Krasotkina; Anastasia Kuchumova; Nikolay N Sokolov; Anastassios C Papageorgiou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-03-24

Review 3.  What makes a good new therapeutic L-asparaginase?

Authors:  Angela Beckett; David Gervais
Journal:  World J Microbiol Biotechnol       Date:  2019-09-24       Impact factor: 3.312

Review 4.  Stereochemistry and Validation of Macromolecular Structures.

Authors:  Alexander Wlodawer
Journal:  Methods Mol Biol       Date:  2017

5.  Expression, purification and crystallization of Helicobacter pylori L-asparaginase.

Authors:  Prathusha Dhavala; Julya Krasotkina; Christine Dubreuil; Anastassios C Papageorgiou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-07-31

6.  Crystal structure and allosteric regulation of the cytoplasmic Escherichia coli L-asparaginase I.

Authors:  Mi-Kyung Yun; Amanda Nourse; Stephen W White; Charles O Rock; Richard J Heath
Journal:  J Mol Biol       Date:  2007-03-30       Impact factor: 5.469

7.  Experimental Data in Support of a Direct Displacement Mechanism for Type I/II L-Asparaginases.

Authors:  Amanda M Schalk; Aleksandar Antansijevic; Michael Caffrey; Arnon Lavie
Journal:  J Biol Chem       Date:  2016-01-05       Impact factor: 5.157

8.  Recombinant deamidated mutants of Erwinia chrysanthemi L-asparaginase have similar or increased activity compared to wild-type enzyme.

Authors:  David Gervais; Nicholas Foote
Journal:  Mol Biotechnol       Date:  2014-10       Impact factor: 2.695

9.  Structural Characterisation of Non-Deamidated Acidic Variants of Erwinia chrysanthemi L-asparaginase Using Small-Angle X-ray Scattering and Ion-Mobility Mass Spectrometry.

Authors:  David Gervais; Darryl King; Patrick Kanda; Nicholas Foote; Lucy Elliott; Phillip Brown; Natacha O Lee; Konstantinos Thalassinos; Claire Pizzey; Robert Rambo; Thomas C Minshull; Mark J Dickman; Stuart Smith
Journal:  Pharm Res       Date:  2015-06-04       Impact factor: 4.200

Review 10.  Structural and biophysical aspects of l-asparaginases: a growing family with amazing diversity.

Authors:  Joanna I Loch; Mariusz Jaskolski
Journal:  IUCrJ       Date:  2021-06-30       Impact factor: 4.769

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