Literature DB >> 12488005

A hypothesis concerning diffusion-limited protein-ligand interactions.

K E van Holde1.   

Abstract

A simple assumption allows the prediction of the numerical value for a 'universal' limiting kinetic rate for wholly diffusion-limited reactions between small neutral molecules and macromolecules. This prediction is compared with appropriate experimental data for binding of ligands to myoglobin and to enzymes. It is shown that in the absence of electrostatic effects, this limit is approached but not exceeded. The model also makes very specific predictions concerning the viscosity and temperature dependence of such reactions. Copyright 2002 Elsevier Science B.V.

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Year:  2002        PMID: 12488005     DOI: 10.1016/s0301-4622(02)00176-x

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  14 in total

1.  Conformational selection or induced fit? A critical appraisal of the kinetic mechanism.

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Journal:  Biochemistry       Date:  2012-07-16       Impact factor: 3.162

2.  Mechanism of Na(+) binding to thrombin resolved by ultra-rapid kinetics.

Authors:  Stefano Gianni; Ylva Ivarsson; Alaji Bah; Leslie A Bush-Pelc; Enrico Di Cera
Journal:  Biophys Chem       Date:  2007-09-29       Impact factor: 2.352

3.  High affinity interactions of Pb2+ with synaptotagmin I.

Authors:  Sachin Katti; Bin Her; Atul K Srivastava; Alexander B Taylor; Steve W Lockless; Tatyana I Igumenova
Journal:  Metallomics       Date:  2018-09-19       Impact factor: 4.526

4.  Quantification of the effects of ionic strength, viscosity, and hydrophobicity on protein-ligand binding affinity.

Authors:  Christos P Papaneophytou; Asterios I Grigoroudis; Campbell McInnes; George Kontopidis
Journal:  ACS Med Chem Lett       Date:  2014-07-09       Impact factor: 4.345

5.  Rapid Quantification of Protein-Ligand Binding via 19F NMR Lineshape Analysis.

Authors:  Samantha S Stadmiller; Jhoan S Aguilar; Christopher A Waudby; Gary J Pielak
Journal:  Biophys J       Date:  2020-04-15       Impact factor: 4.033

6.  Induced Fit Is a Special Case of Conformational Selection.

Authors:  Pradipta Chakraborty; Enrico Di Cera
Journal:  Biochemistry       Date:  2017-05-22       Impact factor: 3.162

7.  A novel heparin-dependent inhibitor of activated protein C that potentiates consumptive coagulopathy in Russell's viper envenomation.

Authors:  An-Chun Cheng; Hua-Lin Wu; Guey-Yueh Shi; Inn-Ho Tsai
Journal:  J Biol Chem       Date:  2012-03-13       Impact factor: 5.157

8.  Kinetic Insights into the Binding between the nSH3 Domain of CrkII and Proline-Rich Motifs in cAbl.

Authors:  Danyun Zeng; Veer S Bhatt; Qingliang Shen; Jae-Hyun Cho
Journal:  Biophys J       Date:  2016-11-01       Impact factor: 4.033

9.  Modeling binding kinetics at the Q(A) site in bacterial reaction centers.

Authors:  Jennifer Madeo; M R Gunner
Journal:  Biochemistry       Date:  2005-08-23       Impact factor: 3.162

Review 10.  Thrombin.

Authors:  Enrico Di Cera
Journal:  Mol Aspects Med       Date:  2008-02-01
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