Literature DB >> 12486522

Simultaneous horizontal gene transfer of a gene coding for ribosomal protein l27 and operational genes in Arthrobacter sp.

Santiago Garcia-Vallvé1, Francesc X Simó, Miguel A Montero, Lluís Arola, Antoni Romeu.   

Abstract

Phylogenetic analysis of bacterial L27 ribosomal proteins showed that, against taxonomy, the L27 protein from the Actinobacteria Arthrobacter sp. clusters with protein sequences from the Bacillus group. The L27 gene clusters in the Arthrobacter sp. genome with six genes responsible for creatinine and sarcosine degradation. Phylogenetic analyses of orthologue proteins encoded by three of these genes also showed a phylogenetic relationship with Bacillus species. Comparisons between the synonymous codon usage of the Arthrobacter sp. genes and those from complete genomes showed that Arthrobacter genes encoding the L27 ribosomal protein and the proteins responsible for the degradation of creatinine and sarcosine have a codon usage that is more similar to that of Bacillus species than that of Arthrobacter. We suggest that the Arthrobacter sp. genes encoding the L27 ribosomal protein and the proteins responsible for the degradation of creatinine and sarcosine were acquired simultaneously through horizontal gene transfer from an unknown Bacillus species.

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Year:  2002        PMID: 12486522     DOI: 10.1007/s00239-002-2358-5

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  11 in total

1.  HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes.

Authors:  S Garcia-Vallve; E Guzman; M A Montero; A Romeu
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  Specific N-terminal cleavage of ribosomal protein L27 in Staphylococcus aureus and related bacteria.

Authors:  Erin A Wall; J Harry Caufield; Charles E Lyons; Keith A Manning; Terje Dokland; Gail E Christie
Journal:  Mol Microbiol       Date:  2014-12-08       Impact factor: 3.501

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4.  Whole genome genetic variation and linkage disequilibrium in a diverse collection of Listeria monocytogenes isolates.

Authors:  Swarnali Louha; Richard J Meinersmann; Travis C Glenn
Journal:  PLoS One       Date:  2021-02-25       Impact factor: 3.240

5.  Horizontal Gene Transfers in prokaryotes show differential preferences for metabolic and translational genes.

Authors:  Aditi Kanhere; Martin Vingron
Journal:  BMC Evol Biol       Date:  2009-01-10       Impact factor: 3.260

6.  Evidence of Horizontal Gene Transfer of 50S Ribosomal Genes rplB, rplD, and rplY in Neisseria gonorrhoeae.

Authors:  Sheeba Santhini Manoharan-Basil; Jolein Gyonne Elise Laumen; Christophe Van Dijck; Tessa De Block; Irith De Baetselier; Chris Kenyon
Journal:  Front Microbiol       Date:  2021-06-10       Impact factor: 5.640

7.  A Microbial Metagenome (Leucobacter sp.) in Caenorhabditis Whole Genome Sequences.

Authors:  Riccardo Percudani
Journal:  Bioinform Biol Insights       Date:  2013-02-24

8.  RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits.

Authors:  Hanno Teeling; Frank Oliver Gloeckner
Journal:  BMC Bioinformatics       Date:  2006-02-13       Impact factor: 3.169

9.  Comparative RNA function analysis reveals high functional similarity between distantly related bacterial 16 S rRNAs.

Authors:  Miyuki Tsukuda; Kei Kitahara; Kentaro Miyazaki
Journal:  Sci Rep       Date:  2017-08-30       Impact factor: 4.379

10.  Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs.

Authors:  Kentaro Miyazaki; Natsuki Tomariguchi
Journal:  Sci Rep       Date:  2019-08-02       Impact factor: 4.379

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