Literature DB >> 12483612

Recharacterization of Pseudomonas fulva Iizuka and Komagata 1963, and proposals of Pseudomonas parafulva sp. nov. and Pseudomonas cremoricolorata sp. nov.

Masataka Uchino1, Osamu Shida, Tai Uchimura, Kazuo Komagata.   

Abstract

Seven Pseudomonas fulva strains obtained from culture collections were taxonomically studied. The seven strains were separated into three clusters (Clusters I to III) on the basis of 16S rRNA gene sequences, and located phylogenetically in the genus Pseudomonas sensu stricto. Further, the strains were classified into 4 groups (Groups I to IV) on the basis of DNA-DNA similarity. As a result, Cluster I was split into Groups I and II. Group I included the type strain of P. fulva and two strains, and levels of DNA-DNA similarity ranged from 88 to 100% among the strains. Group II contained two strains, and the level between the two strains ranged from 91 to 100%. Group III consisted of one strain. Group IV included one strain, and this strain showed a high level of DNA-DNA similarity with the type strain of Pseudomonas straminea NRIC 0164(T). Clusters II and III corresponded to Groups III and IV, respectively. The four groups were separated from one another and from related Pseudomonas species at the level from 3 to 45% of DNA-DNA similarity. The strains of Groups I, II, and III had ubiquinone 9 as the major quinone. According to numerical analysis by the use of 133 phenotypic characteristics, the seven P. fulva strains were split into four phenons (Phenons I to IV). The groups by DNA-DNA similarity corresponded well with the phenons produced by numerical taxonomy, and differential characteristics were recognized. Consequently, Group I was regarded as P. fulva because the type strain (NRIC 0180(T)) of this species was included in this group. Strains in Group II were identified as a new species, Pseudomonas parafulva sp. nov., and the type strain is AJ 2129 (=IFO 16636=JCM 11244=NRIC 0501). NRIC 0181 in Group III was identified as a new species, Pseudomonas cremoricolorata sp. nov., and the type strain is NRIC 0181 (=IFO 16634=JCM 11246). NRIC 0182 in Group IV was identified as P. straminea on the basis of the high level of DNA-DNA similarity with the type strain of this species.

Entities:  

Year:  2001        PMID: 12483612     DOI: 10.2323/jgam.47.247

Source DB:  PubMed          Journal:  J Gen Appl Microbiol        ISSN: 0022-1260            Impact factor:   1.452


  11 in total

1.  First report of bloodstream infection caused by Pseudomonas fulva.

Authors:  Yoonmi Seok; Heebong Shin; Yangsoon Lee; Injoo Cho; Sungwon Na; Dongeun Yong; Seok Hoon Jeong; Kyungwon Lee
Journal:  J Clin Microbiol       Date:  2010-05-05       Impact factor: 5.948

2.  Polymicrobial ventriculitis involving Pseudomonas fulva.

Authors:  Paulina A Rebolledo; Catphuong Cathy L Vu; Renee Donahue Carlson; Colleen S Kraft; Evan J Anderson; Eileen M Burd
Journal:  J Clin Microbiol       Date:  2014-03-19       Impact factor: 5.948

3.  First case of human infection due to Pseudomonas fulva, an environmental bacterium isolated from cerebrospinal fluid.

Authors:  Marisa N Almuzara; Miryam Vazquez; Naoto Tanaka; Marisa Turco; Maria S Ramirez; Eduardo L Lopez; Fernando Pasteran; Melina Rapoport; Adriana Procopio; Carlos A Vay
Journal:  J Clin Microbiol       Date:  2009-12-23       Impact factor: 5.948

4.  Type material in the NCBI Taxonomy Database.

Authors:  Scott Federhen
Journal:  Nucleic Acids Res       Date:  2014-11-14       Impact factor: 19.160

5.  Pseudomonas cremoricolorata strain ND07 produces N-acyl homoserine lactones as quorum sensing molecules.

Authors:  Nina Yusrina Muhamad Yunos; Wen-Si Tan; Chong-Lek Koh; Choon-Kook Sam; Nur Izzati Mohamad; Pui-Wan Tan; Tan-Guan-Sheng Adrian; Wai-Fong Yin; Kok-Gan Chan
Journal:  Sensors (Basel)       Date:  2014-06-30       Impact factor: 3.576

6.  When Genome-Based Approach Meets the "Old but Good": Revealing Genes Involved in the Antibacterial Activity of Pseudomonas sp. P482 against Soft Rot Pathogens.

Authors:  Dorota M Krzyżanowska; Adam Ossowicki; Magdalena Rajewska; Tomasz Maciąg; Magdalena Jabłońska; Michał Obuchowski; Stephan Heeb; Sylwia Jafra
Journal:  Front Microbiol       Date:  2016-05-26       Impact factor: 5.640

7.  High quality draft genome sequences of Pseudomonas fulva DSM 17717(T), Pseudomonas parafulva DSM 17004(T) and Pseudomonas cremoricolorata DSM 17059(T) type strains.

Authors:  Arantxa Peña; Antonio Busquets; Margarita Gomila; Magdalena Mulet; Rosa M Gomila; T B K Reddy; Marcel Huntemann; Amrita Pati; Natalia Ivanova; Victor Markowitz; Elena García-Valdés; Markus Göker; Tanja Woyke; Hans-Peter Klenk; Nikos Kyrpides; Jorge Lalucat
Journal:  Stand Genomic Sci       Date:  2016-09-01

8.  Identification of discriminative characteristics for clusters from biologic data with InforBIO software.

Authors:  Naoto Tanaka; Masataka Uchino; Satoru Miyazaki; Hideaki Sugawara
Journal:  BMC Bioinformatics       Date:  2007-08-02       Impact factor: 3.169

9.  Posttraumatic Skin and Soft-Tissue Infection due to Pseudomonas fulva.

Authors:  Fernando Cobo; Gemma Jiménez; Javier Rodríguez-Granger; Antonio Sampedro
Journal:  Case Rep Infect Dis       Date:  2016-09-26

10.  Screening, Identification and Efficacy Evaluation of Antagonistic Bacteria for Biocontrol of Soft Rot Disease Caused by Dickeya zeae.

Authors:  Jieling Li; Ming Hu; Yang Xue; Xia Chen; Guangtao Lu; Lianhui Zhang; Jianuan Zhou
Journal:  Microorganisms       Date:  2020-05-09
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