Literature DB >> 12483570

Biochemical and genetic bases of microbial degradation of polychlorinated biphenyls (PCBs).

Kensuke Furukawa1.   

Abstract

The microbial degradation of polychlorinated biphenyls (PCBs) has been extensively conducted by many workers, and the following general results have been obtained. (1) PCBs are degraded oxidatively by aerobic bacteria and other microorganisms such as white rot fungi. PCBs are also reductively dehalogenated by anaerobic microbial consortia. (2) The biodegradability of PCBs is highly dependent on chlorine substitution, i.e., number and position of chlorine. The degradation and dehalogenation capabilities are also highly strain dependent. (3) Biphenyl-utilizing bacteria can cometabolize many PCB congeners to chlorobenzoates by biphenl-catabolic enzymes. (4) Enzymes involved in the PCB degradation were purified and characterized. Biphenyl dioxygenase, ring-cleavage dioxygenase, and hydrolase are crystallized, and two ring-cleavage dioxygenases are being solved by x-ray crystallography. (5) The bph gene clusters responsible for PCB degradation are cloned from a variety of bacterial strains. The structure and function are analyzed with respect to the evolutionary relationship. (6) The molecular engineering of biphenyl dioxygenases is successfully performed by DNA shuffling, domain exchange, and subunit exchange. The evolved enzymes exhibit wide and enhanced degradation capacities for PCBs and other aromatic compounds.

Entities:  

Year:  2000        PMID: 12483570     DOI: 10.2323/jgam.46.283

Source DB:  PubMed          Journal:  J Gen Appl Microbiol        ISSN: 0022-1260            Impact factor:   1.452


  14 in total

1.  Anaerobic crystallization and initial X-ray diffraction data of biphenyl 2,3-dioxygenase from Burkholderia xenovorans LB400: addition of agarose improved the quality of the crystals.

Authors:  Pravindra Kumar; Leticia Gómez-Gil; Mahmood Mohammadi; Michel Sylvestre; Lindsay D Eltis; Jeffrey T Bolin
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-12-21

2.  Dioxygenation of the biphenyl dioxygenation product.

Authors:  Heike Overwin; Myriam González; Valentina Méndez; Michael Seeger; Victor Wray; Bernd Hofer
Journal:  Appl Environ Microbiol       Date:  2012-04-13       Impact factor: 4.792

3.  Matrix-assisted laser desorption ionization (MALDI)-time of flight mass spectrometry- and MALDI biotyper-based identification of cultured biphenyl-metabolizing bacteria from contaminated horseradish rhizosphere soil.

Authors:  Ondrej Uhlik; Michal Strejcek; Petra Junkova; Miloslav Sanda; Miluse Hroudova; Cestmir Vlcek; Martina Mackova; Tomas Macek
Journal:  Appl Environ Microbiol       Date:  2011-08-05       Impact factor: 4.792

4.  Functional characterization of a catabolic plasmid from polychlorinated- biphenyl-degrading Rhodococcus sp. strain RHA1.

Authors:  René Warren; William W L Hsiao; Hisashi Kudo; Matt Myhre; Manisha Dosanjh; Anca Petrescu; Hiroyuki Kobayashi; Satoru Shimizu; Keisuke Miyauchi; Eiji Masai; George Yang; Jeff M Stott; Jacquie E Schein; Heesun Shin; Jaswinder Khattra; Duane Smailus; Yaron S Butterfield; Asim Siddiqui; Robert Holt; Marco A Marra; Steven J M Jones; William W Mohn; Fiona S L Brinkman; Masao Fukuda; Julian Davies; Lindsay D Eltis
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

5.  Evolutionarily divergent extradiol dioxygenases possess higher specificities for polychlorinated biphenyl metabolites.

Authors:  Pascal D Fortin; Andy T-F Lo; María-Amparo Haro; Stefan R Kaschabek; Walter Reineke; Lindsay D Eltis
Journal:  J Bacteriol       Date:  2005-01       Impact factor: 3.490

6.  Characterization of the second LysR-type regulator in the biphenyl-catabolic gene cluster of Pseudomonas pseudoalcaligenes KF707.

Authors:  Takahito Watanabe; Hidehiko Fujihara; Kensuke Furukawa
Journal:  J Bacteriol       Date:  2003-06       Impact factor: 3.490

7.  The lid domain of the MCP hydrolase DxnB2 contributes to the reactivity toward recalcitrant PCB metabolites.

Authors:  Antonio C Ruzzini; Shiva Bhowmik; Katherine C Yam; Subhangi Ghosh; Jeffrey T Bolin; Lindsay D Eltis
Journal:  Biochemistry       Date:  2013-08-09       Impact factor: 3.162

8.  Characterization of extradiol dioxygenases from a polychlorinated biphenyl-degrading strain that possess higher specificities for chlorinated metabolites.

Authors:  Frédéric H Vaillancourt; María-Amparo Haro; Nathalie M Drouin; Zamil Karim; Halim Maaroufi; Lindsay D Eltis
Journal:  J Bacteriol       Date:  2003-02       Impact factor: 3.490

9.  Bioremediation in marine ecosystems: a computational study combining ecological modeling and flux balance analysis.

Authors:  Marianna Taffi; Nicola Paoletti; Claudio Angione; Sandra Pucciarelli; Mauro Marini; Pietro Liò
Journal:  Front Genet       Date:  2014-09-12       Impact factor: 4.599

10.  Biodegradation of PCB congeners by Paraburkholderia xenovorans LB400 in presence and absence of sediment during lab bioreactor experiments.

Authors:  Christian M Bako; Timothy E Mattes; Rachel F Marek; Keri C Hornbuckle; Jerald L Schnoor
Journal:  Environ Pollut       Date:  2020-12-23       Impact factor: 8.071

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