Literature DB >> 12463963

Enriching the structure of the UMLS semantic network.

Li Zhang1, Yehoshua Perl, Michael H Halper, James Geller, James J Cimino.   

Abstract

The Unified Medical Language System's (UMLS's) Semantic Network (SN)---consisting of a network of semantic types---has a two-tree structure, where each semantic type has at most one parent semantic type. This arrangement is restrictive because some semantic types are, by their definition, specializations of several parents. As a proposed enhancement to the SN, its semantic types have previously been partitioned into groups, each of which contains semantic types of some specific area. However, some groups of this proposed partition contain forest (i.e., multiple-tree) structures or even isolated semantic types. Both situations imply a disconnected internal structure. Connectivity is actually one way to assess the proposed "semantic validity" principle for partitions. It is a desired, although not required, property. In this paper, we introduce a methodology for identifying "missing" IS-A links and adding them to the SN. This process transforms the SN into a Directed Acyclic Graph (DAG) structure, with semantic types permitted to have multiple parents. A result of our methodology is the transformation of the proposed SN partition into groups satisfying the connectivity property.

Mesh:

Year:  2002        PMID: 12463963      PMCID: PMC2244261     

Source DB:  PubMed          Journal:  Proc AMIA Symp        ISSN: 1531-605X


  5 in total

1.  The role of definitions in biomedical concept representation.

Authors:  J Michael; J L Mejino; C Rosse
Journal:  Proc AMIA Symp       Date:  2001

2.  A metaschema of the UMLS based on a partition of its semantic network.

Authors:  M H Halper; Z Chen; J Geller; Y Perl
Journal:  Proc AMIA Symp       Date:  2001

3.  Partitioning the UMLS semantic network.

Authors:  Zong Chen; Yehoshua Perl; Michael Halper; James Geller; Huanying Gu
Journal:  IEEE Trans Inf Technol Biomed       Date:  2002-06

4.  The Unified Medical Language System: toward a collaborative approach for solving terminologic problems.

Authors:  K E Campbell; D E Oliver; E H Shortliffe
Journal:  J Am Med Inform Assoc       Date:  1998 Jan-Feb       Impact factor: 4.497

5.  The Unified Medical Language System: an informatics research collaboration.

Authors:  B L Humphreys; D A Lindberg; H M Schoolman; G O Barnett
Journal:  J Am Med Inform Assoc       Date:  1998 Jan-Feb       Impact factor: 4.497

  5 in total
  2 in total

1.  Aligning knowledge sources in the UMLS: methods, quantitative results, and applications.

Authors:  Olivier Bodenreider; Anita Burgun
Journal:  Stud Health Technol Inform       Date:  2004

Review 2.  A review of auditing methods applied to the content of controlled biomedical terminologies.

Authors:  Xinxin Zhu; Jung-Wei Fan; David M Baorto; Chunhua Weng; James J Cimino
Journal:  J Biomed Inform       Date:  2009-03-12       Impact factor: 6.317

  2 in total

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