Literature DB >> 12463961

Matching of flow-cytometry histograms using information theory in feature space.

Qing Zeng1, Matthew Wand, Alan J Young, James Rawn, Edgar L Milford, Steven J Mentzer, Robert A Greenes.   

Abstract

Flow cytometry is a widely available technique for analyzing cell-surface protein expression. Data obtained from flow cytometry is frequently used to produce fluorescence intensity histograms. Comparison of histograms can be useful in the identification of unknown molecules and in the analysis of protein expression. In this study, we examined the combination of a new smoothing technique called SiZer with information theory to measure the difference between cytometry histograms. SiZer provides cross-bandwidth smoothing and allowed analysis in feature space. The new methods were tested on a panel of monoclonal antibodies raised against proteins expressed on peripheral blood lymphocytes and compared with previous methods. The findings suggest that comparing information content of histograms in feature space is effective and efficient for identifying antibodies with similar cell-surface binding patterns.

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Year:  2002        PMID: 12463961      PMCID: PMC2244447     

Source DB:  PubMed          Journal:  Proc AMIA Symp        ISSN: 1531-605X


  11 in total

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Authors:  J V Watson
Journal:  Cytometry       Date:  2001-01-01

2.  On the use of the Kolmogorov-Smirnov statistical test for immunofluorescence histogram comparison.

Authors:  F Lampariello
Journal:  Cytometry       Date:  2000-03-01

Review 3.  A brief history of numbers and statistics with cytometric applications.

Authors:  J V Watson
Journal:  Cytometry       Date:  2001-02-15

Review 4.  Principles of flow cytometry: an overview.

Authors:  A L Givan
Journal:  Methods Cell Biol       Date:  2001       Impact factor: 1.441

5.  Molecular identification using flow cytometry histograms and information theory.

Authors:  Q Zeng; A J Young; A Boxwala; J Rawn; W Long; M Wand; M Salganik; E L Milford; S J Mentzer; R A Greenes
Journal:  Proc AMIA Symp       Date:  2001

6.  Complete mathematical modeling method for the analysis of immunofluorescence distributions composed of negative and weakly positive cells.

Authors:  F Lampariello; A Aiello
Journal:  Cytometry       Date:  1998-07-01

7.  Multi-modal volume registration by maximization of mutual information.

Authors:  W M Wells; P Viola; H Atsumi; S Nakajima; R Kikinis
Journal:  Med Image Anal       Date:  1996-03       Impact factor: 8.545

8.  Distinct recirculating and non-recirculating B-lymphocyte pools in the peripheral blood are defined by coordinated expression of CD21 and L-selectin.

Authors:  A J Young; W L Marston; M Dessing; L Dudler; W R Hein
Journal:  Blood       Date:  1997-12-15       Impact factor: 22.113

9.  Nonparametric flow cytometry analysis.

Authors:  C B Bagwell; J L Hudson; G L Irvin
Journal:  J Histochem Cytochem       Date:  1979-01       Impact factor: 2.479

10.  Evaluation of an alternative to the Kolmogorov-Smirnov test for flow cytometric histogram comparisons.

Authors:  H H Parikh; W C Li; M Ramanathan
Journal:  J Immunol Methods       Date:  1999-10-29       Impact factor: 2.303

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  2 in total

1.  A framework for analytical characterization of monoclonal antibodies based on reactivity profiles in different tissues.

Authors:  Elizabeth Rossin; Tsung-I Lin; Hsiu J Ho; Steven J Mentzer; Saumyadipta Pyne
Journal:  Bioinformatics       Date:  2011-08-16       Impact factor: 6.937

2.  Hierarchical clustering of monoclonal antibody reactivity patterns in nonhuman species.

Authors:  Juan Pablo Pratt; Qing Zeng; Dino Ravnic; Harold Huss; James Rawn; Steven J Mentzer
Journal:  Cytometry A       Date:  2009-09       Impact factor: 4.355

  2 in total

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