Literature DB >> 12463913

A rule driven bi-directional translation system for remapping queries and result sets between a mediated schema and heterogeneous data sources.

R Shaker1, P Mork, M Barclay, P Tarczy-Hornoch.   

Abstract

As the number of online biomedical data sources increases, so too do the number of ways to access such data. The research described herein focuses on creating a data access system that provides bi-directional translation and mapping of data between heterogeneous databases and a mediated schema. Semantic mapping rules stored in a knowledge base are used by our generalized software to convert XML query results obtained from each data source to a common schema representing a single ontology. We apply this approach to the domain of online genetic databases, demonstrating the system's scalability and integratability.

Mesh:

Year:  2002        PMID: 12463913      PMCID: PMC2244455     

Source DB:  PubMed          Journal:  Proc AMIA Symp        ISSN: 1531-605X


  4 in total

1.  Expression array annotation using the BioMediator biological data integration system and the BioConductor analytic platform.

Authors:  H Mei; P Tarczy-Hornoch; P Mork; A J Rossini; R Shaker; L Donelson
Journal:  AMIA Annu Symp Proc       Date:  2003

2.  BioMediator data integration: beyond genomics to neuroscience data.

Authors:  K Wang; P Tarczy-Hornoch; R Shaker; P Mork; J F Brinkley
Journal:  AMIA Annu Symp Proc       Date:  2005

3.  Differences among cell-structure ontologies: FMA, GO, & CCO.

Authors:  Alan P Au; Xiang Li; John H Gennari
Journal:  AMIA Annu Symp Proc       Date:  2006

4.  Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes.

Authors:  Spiro P Pantazatos; Jianrong Li; Paul Pavlidis; Yves A Lussier
Journal:  Cancer Inform       Date:  2009-06-08
  4 in total

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