Literature DB >> 12463856

Representing nested semantic information in a linear string of text using XML.

Michael Krauthammer1, Stephen B Johnson, George Hripcsak, David A Campbell, Carol Friedman.   

Abstract

XML has been widely adopted as an important data interchange language. The structure of XML enables sharing of data elements with variable degrees of nesting as long as the elements are grouped in a strict tree-like fashion. This requirement potentially restricts the usefulness of XML for marking up written text, which often includes features that do not properly nest within other features. We encountered this problem while marking up medical text with structured semantic information from a Natural Language Processor. Traditional approaches to this problem separate the structured information from the actual text mark up. This paper introduces an alternative solution, which tightly integrates the semantic structure with the text. The resulting XML markup preserves the linearity of the medical texts and can therefore be easily expanded with additional types of information.

Mesh:

Year:  2002        PMID: 12463856      PMCID: PMC2244450     

Source DB:  PubMed          Journal:  Proc AMIA Symp        ISSN: 1531-605X


  4 in total

1.  A broad-coverage natural language processing system.

Authors:  C Friedman
Journal:  Proc AMIA Symp       Date:  2000

2.  Representing information in patient reports using natural language processing and the extensible markup language.

Authors:  C Friedman; G Hripcsak; L Shagina; H Liu
Journal:  J Am Med Inform Assoc       Date:  1999 Jan-Feb       Impact factor: 4.497

3.  Towards a comprehensive medical language processing system: methods and issues.

Authors:  C Friedman
Journal:  Proc AMIA Annu Fall Symp       Date:  1997

4.  A general natural-language text processor for clinical radiology.

Authors:  C Friedman; P O Alderson; J H Austin; J J Cimino; S B Johnson
Journal:  J Am Med Inform Assoc       Date:  1994 Mar-Apr       Impact factor: 4.497

  4 in total
  1 in total

1.  A native XML database design for clinical document research.

Authors:  Stephen B Johnson; David A Campbell; Michael Krauthammer; P Karina Tulipano; Eneida A Medonca; Carol Friedman; George Hripcsak
Journal:  AMIA Annu Symp Proc       Date:  2003
  1 in total

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