Literature DB >> 12463802

Unsupervised imaging, registration and archiving of tissue microarrays.

Wenjin Chen1, David J Foran, Michael Reiss.   

Abstract

Tissue microarray (TMA) technology offers several advantages over traditional methods of specimen preparation by maximizing limited tissue resources and providing the means for visualizing molecular targets. Currently, the primary methods used to evaluate arrays involves the interactive review of TMA samples while they are viewed by microscope and are subjectively evaluated and scored. The process is slow, tedious and prone to error. In order to facilitate large-scale, multi-institutional studies a more automated and reliable means for processing tissue microarrays is needed. We have developed a web-based prototype which features automated imaging, registration and intelligent archiving of tissue microarrays in multi-user, network environments.

Mesh:

Year:  2002        PMID: 12463802      PMCID: PMC2244557     

Source DB:  PubMed          Journal:  Proc AMIA Symp        ISSN: 1531-605X


  3 in total

Review 1.  Tissue microarray: a new technology for amplification of tissue resources.

Authors:  D L Rimm; R L Camp; L A Charette; J Costa; D A Olsen; M Reiss
Journal:  Cancer J       Date:  2001 Jan-Feb       Impact factor: 3.360

2.  Computer-assisted discrimination among malignant lymphomas and leukemia using immunophenotyping, intelligent image repositories, and telemicroscopy.

Authors:  D J Foran; D Comaniciu; P Meer; L A Goodell
Journal:  IEEE Trans Inf Technol Biomed       Date:  2000-12

3.  Tissue microarrays for high-throughput molecular profiling of tumor specimens.

Authors:  J Kononen; L Bubendorf; A Kallioniemi; M Bärlund; P Schraml; S Leighton; J Torhorst; M J Mihatsch; G Sauter; O P Kallioniemi
Journal:  Nat Med       Date:  1998-07       Impact factor: 53.440

  3 in total
  9 in total

1.  A novel method for preparation of tissue microarray.

Authors:  Han-Lei Dan; Ya-Li Zhang; Yan Zhang; Ya-Dong Wang; Zuo-Sheng Lai; Yu-Jie Yang; Hai-Hong Cui; Yan-Ting Jian; Jian Geng; Yan-Qing Ding; Chun-Hai Guo; Dian-Yuan Zhou
Journal:  World J Gastroenterol       Date:  2004-02-15       Impact factor: 5.742

Review 2.  Diagnostic pathology and laboratory medicine in the age of "omics": a paper from the 2006 William Beaumont Hospital Symposium on Molecular Pathology.

Authors:  William G Finn
Journal:  J Mol Diagn       Date:  2007-07-25       Impact factor: 5.568

3.  Advances in cancer tissue microarray technology: Towards improved understanding and diagnostics.

Authors:  Wenjin Chen; David J Foran
Journal:  Anal Chim Acta       Date:  2006-01-23       Impact factor: 6.558

4.  ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology.

Authors:  David J Foran; Lin Yang; Wenjin Chen; Jun Hu; Lauri A Goodell; Michael Reiss; Fusheng Wang; Tahsin Kurc; Tony Pan; Ashish Sharma; Joel H Saltz
Journal:  J Am Med Inform Assoc       Date:  2011-05-23       Impact factor: 4.497

5.  A TMA de-arraying method for high throughput biomarker discovery in tissue research.

Authors:  Yinhai Wang; Kienan Savage; Claire Grills; Andrena McCavigan; Jacqueline A James; Dean A Fennell; Peter W Hamilton
Journal:  PLoS One       Date:  2011-10-07       Impact factor: 3.240

6.  A data model and database for high-resolution pathology analytical image informatics.

Authors:  Fusheng Wang; Jun Kong; Lee Cooper; Tony Pan; Tahsin Kurc; Wenjin Chen; Ashish Sharma; Cristobal Niedermayr; Tae W Oh; Daniel Brat; Alton B Farris; David J Foran; Joel Saltz
Journal:  J Pathol Inform       Date:  2011-07-26

7.  Internet-based Profiler system as integrative framework to support translational research.

Authors:  Robert Kim; Francesca Demichelis; Jeffery Tang; Alberto Riva; Ronglai Shen; Doug F Gibbs; Vasudeva Mahavishno; Arul M Chinnaiyan; Mark A Rubin
Journal:  BMC Bioinformatics       Date:  2005-12-19       Impact factor: 3.169

8.  Decentralized data sharing of tissue microarrays for investigative research in oncology.

Authors:  Wenjin Chen; Cristina Schmidt; Manish Parashar; Michael Reiss; David J Foran
Journal:  Cancer Inform       Date:  2007-06-06

9.  TAMEE: data management and analysis for tissue microarrays.

Authors:  Gerhard G Thallinger; Kerstin Baumgartner; Martin Pirklbauer; Martina Uray; Elke Pauritsch; Gabor Mehes; Charles R Buck; Kurt Zatloukal; Zlatko Trajanoski
Journal:  BMC Bioinformatics       Date:  2007-03-07       Impact factor: 3.169

  9 in total

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