Literature DB >> 12463679

QSAR of ecotoxicological data on the basis of data-driven if-then-rules.

Stefan Pudenz1, Rainer Brüggemann, Hans-Georg Bartel.   

Abstract

A rather small data matrix of seven chemicals and 17 different ecotoxicological end points is examined by methods of Discrete Mathematics. Especially, the lattice theory and its variant, the Formal Concept Analysis may be an attractive tool to analyze Quantitative Structure Activity Relationships, when a numerical functional approach is not at hand. The central item is the so called concept, which is a pair of subsets: A subset of molecules and a subset of properties which correspond to each other. The concepts are partially ordered due to a subset relation. From this subset relation, if-then-rules are derived, which aim to relate the structure of molecules with their ecotoxicological properties. For example, the following chemical rule is found: Cl --> (2A,2C,2M). That means, all substances considered here having a "-Cl" as structural code have a medium ecotoxicological effect on Daphnia magna, Orconectes immunisare (Crustacea) and on Photobacterium phosphoreum, at least within the training set.

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Year:  2002        PMID: 12463679     DOI: 10.1023/a:1020501204807

Source DB:  PubMed          Journal:  Ecotoxicology        ISSN: 0963-9292            Impact factor:   2.823


  2 in total

1.  The use of Hasse diagrams as a potential approach for inverse QSAR.

Authors:  R Brüggemann; S Pudenz; L Carlsen; P B Sørensen; M Thomsen; R K Mishra
Journal:  SAR QSAR Environ Res       Date:  2001-02       Impact factor: 3.000

2.  Chemometrical evaluation of multispecies-multichemical data by means of graphical techniques combined with multivariate analyses.

Authors:  J Devillers; J Thioulouse; W Karcher
Journal:  Ecotoxicol Environ Saf       Date:  1993-12       Impact factor: 6.291

  2 in total
  2 in total

1.  Application of a sediment quality triad and different statistical approaches (Hasse diagrams and fuzzy logic) for the comparative evaluation of small streams.

Authors:  Henner Hollert; Susanne Heise; Stefan Pudenz; Rainer Brüggemann; Wolfgang Ahlf; Thomas Braunbeck
Journal:  Ecotoxicology       Date:  2002-10       Impact factor: 2.823

2.  Discrimination between modes of toxic action of phenols using rule based methods.

Authors:  Ulf Norinder; Per Lidén; Henrik Boström
Journal:  Mol Divers       Date:  2006-05-24       Impact factor: 2.943

  2 in total

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